Basic Information

Insect: Pogonocherus hispidulus
Gene Symbol: -
Assembly: GCA_963924545.1
Location: OZ004699.1:33567817-33570690[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 1.6e-07 1.6e-05 26.6 0.8 1 23 215 237 215 237 0.98

2 12 4.4e-06 0.00045 22.1 7.2 1 23 243 265 243 265 0.98

3 12 2.8e-05 0.0029 19.6 0.2 1 23 271 293 271 293 0.99

4 12 6.4e-07 6.5e-05 24.7 0.5 1 23 299 321 299 321 0.98

5 12 0.00067 0.068 15.2 1.2 1 23 327 349 327 349 0.97

6 12 4.5e-07 4.5e-05 25.2 3.9 2 23 356 377 355 377 0.97

7 12 2.3e-07 2.3e-05 26.2 1.0 1 23 382 404 382 404 0.97

8 12 4.9e-06 0.0005 22.0 2.0 1 23 410 432 410 432 0.99

9 12 1.5e-06 0.00015 23.6 2.0 1 23 437 459 437 459 0.99

10 12 3.2e-06 0.00032 22.6 4.2 1 23 465 487 465 487 0.98

11 12 6.1e-07 6.2e-05 24.8 0.2 1 23 493 515 493 515 0.97

12 12 1.8e-05 0.0018 20.2 0.4 1 23 521 543 521 543 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	1.6e-07	1.6e-05	26.6	0.8	1	23	215	237	215	237	0.98
2	12	4.4e-06	0.00045	22.1	7.2	1	23	243	265	243	265	0.98
3	12	2.8e-05	0.0029	19.6	0.2	1	23	271	293	271	293	0.99
4	12	6.4e-07	6.5e-05	24.7	0.5	1	23	299	321	299	321	0.98
5	12	0.00067	0.068	15.2	1.2	1	23	327	349	327	349	0.97
6	12	4.5e-07	4.5e-05	25.2	3.9	2	23	356	377	355	377	0.97
7	12	2.3e-07	2.3e-05	26.2	1.0	1	23	382	404	382	404	0.97
8	12	4.9e-06	0.0005	22.0	2.0	1	23	410	432	410	432	0.99
9	12	1.5e-06	0.00015	23.6	2.0	1	23	437	459	437	459	0.99
10	12	3.2e-06	0.00032	22.6	4.2	1	23	465	487	465	487	0.98
11	12	6.1e-07	6.2e-05	24.8	0.2	1	23	493	515	493	515	0.97
12	12	1.8e-05	0.0018	20.2	0.4	1	23	521	543	521	543	0.99

Sequence Information

Coding Sequence: atgaataacaTAAATATCTCATATTCAGACTGTTGTCGTATTTGTTTAAGACTGGAGTCCGGTAGTACTTCTTTAAATGCGCTGGACactgataatataaaaatttgtgatAAATTGTTGGCCTGTGTTTCTGATATAGTATGGCTAAGGGAGGGATTATCAGATTTTCTCTGTTCCAATTGCTTATGTACTTTAAGGATAGCATACGATTTTCGATTATTGTGTTTacagtcggaaaataatattcaacaaTTTTTCAACCAAGGCAAATCCAACTATCAAACACTAAGTAACTATGTTTCCAATACAACTGAAATACATACGAATCAAGTTATCGATAAATCTATTGAGCATCACCAAAATTCAGATTGCTTAAATTTGAAACAATTCTTGGATGACACAGATTTACTAAAATCTGCAAGTCAAGgcaataataattcaaatactACTCCAGATTTGATATTAACTACTGGACTTAATAATAAAGTTGACAAGGAGGTGCAGAAAGAATTCTTTGTAACTACACGTTCAATTAAAATTCAAACACAACCTTTACCACAGTATCCAACACTCACTCCAGCAGCAGCCCGTTTACAGGCCCAACAGAATAAAACGACAATAGTTGTTGAAGATCCATGCAAATTCTCTTGCGAGCAATGTGGGAAAAGATACGCAAAAAATgccaatttaaaaatacatatgaGAACACATACTGGAGAAAAACCCTTCGAGTGTAAATATTGTGAAAAAAGGTTTTACCACTCCTCTCATTTAAGAGAGCATATTAGGCGGCACACTGGAGAAAAACCATATCAATGTTCCGTGTGTGCCAAAAGATTTACAATTACCGCAGAGCTAACGGTTCACATGAGGATACATACAGGAGAAAAACCATATGCTTGTCAACAGTGTGACAAACGTTACATCAAAGCCAGTGATTTACAGGTTCATATGCGTACACATACAGGTGAAAAGCCTTTTGCTTGTAATTATTGTGACAGAAAATTTTCCTCTGGATATATACTCAATTCCCATTTAAAAACACATACCGGTGATAGGCCGTGGCAGTGCAATTACTGCTCCAAATCTTTCACACAGTCGTCCCACTTGACAGTCCACTTGAAGAAGCATACAGGTGAAAAATTCCCTTGCAAAATCTGCGGTCTAGAATTCACACATTCCTCCCAGTTAACCGTCCATATGAGAGACCATACTGGAAAACAACCGTATAAGTGTTCTGTTTGTGATAAAATTTGCAACTATGCATCTGAGCTGCAGAGCCATATGATGAAGCATACAGGGGAGAAATTCCAGTGCGTAACTTGTGATAAGAAATTTACAACATCCGCCTACTTACAAGAACATACAAGAACACATACAGGAGagaatttattttgttgcaCGATGTGTGACAGGACATTTACAAGGGCCACATATTTAGAAAAACACGTCAGGACACATACTGgtGAAAAGCCGTTTGCCTGTGTTATTTGTGATAAACGTTTTACACAAGCAGGATCGTTAAACGTTCACATAAGGAAACATACTGACGAAAAACCTTATACGTGCAGCATCTGTAATAGGGCTTTTGCCACATCTGCATACTTGTCGGGGCATTTGAAGAAGCATAAAAAGTATACCAATTTGTAG
Protein Sequence: MNNINISYSDCCRICLRLESGSTSLNALDTDNIKICDKLLACVSDIVWLREGLSDFLCSNCLCTLRIAYDFRLLCLQSENNIQQFFNQGKSNYQTLSNYVSNTTEIHTNQVIDKSIEHHQNSDCLNLKQFLDDTDLLKSASQGNNNSNTTPDLILTTGLNNKVDKEVQKEFFVTTRSIKIQTQPLPQYPTLTPAAARLQAQQNKTTIVVEDPCKFSCEQCGKRYAKNANLKIHMRTHTGEKPFECKYCEKRFYHSSHLREHIRRHTGEKPYQCSVCAKRFTITAELTVHMRIHTGEKPYACQQCDKRYIKASDLQVHMRTHTGEKPFACNYCDRKFSSGYILNSHLKTHTGDRPWQCNYCSKSFTQSSHLTVHLKKHTGEKFPCKICGLEFTHSSQLTVHMRDHTGKQPYKCSVCDKICNYASELQSHMMKHTGEKFQCVTCDKKFTTSAYLQEHTRTHTGENLFCCTMCDRTFTRATYLEKHVRTHTGEKPFACVICDKRFTQAGSLNVHIRKHTDEKPYTCSICNRAFATSAYLSGHLKKHKKYTNL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00110756;
90% Identity: -
80% Identity: -