Basic Information

Insect: Pogonocherus hispidulus
Gene Symbol: -
Assembly: GCA_963924545.1
Location: OZ004692.1:115909640-115914319[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 26 0.018 1.9 10.7 3.1 1 23 25 47 25 47 0.98

2 26 9.5e-05 0.0097 17.9 1.3 1 23 53 75 53 75 0.98

3 26 0.00026 0.027 16.5 4.0 1 23 81 104 81 104 0.98

4 26 0.0051 0.52 12.5 2.2 1 23 116 139 116 139 0.94

5 26 0.065 6.6 9.0 3.0 3 23 150 170 148 170 0.95

6 26 0.0025 0.26 13.4 0.6 1 23 176 198 176 198 0.98

7 26 1.1e-05 0.0011 20.9 0.3 1 23 204 226 204 226 0.98

8 26 0.16 17 7.7 0.1 2 15 233 246 233 249 0.84

9 26 0.011 1.1 11.5 0.2 2 23 289 310 288 310 0.94

10 26 0.12 12 8.2 6.2 1 23 316 338 316 338 0.97

11 26 0.13 13 8.1 1.0 1 11 344 354 344 366 0.79

12 26 7.6e-05 0.0077 18.2 2.1 1 23 372 395 372 395 0.97

13 26 0.0047 0.48 12.6 2.7 1 23 407 430 407 430 0.96

14 26 0.0049 0.5 12.5 0.7 2 23 440 461 439 461 0.96

15 26 0.0001 0.011 17.8 0.1 1 20 467 486 467 489 0.93

16 26 1.8e-05 0.0019 20.2 1.1 1 23 495 517 495 517 0.98

17 26 0.0073 0.74 12.0 0.0 3 22 525 544 524 544 0.93

18 26 1.3 1.4e+02 4.9 1.0 2 23 587 608 586 609 0.92

19 26 3 3e+02 3.8 1.5 1 23 614 636 614 636 0.93

20 26 0.057 5.8 9.2 2.6 1 23 642 664 642 664 0.91

21 26 0.0013 0.13 14.3 3.8 1 23 670 693 670 693 0.98

22 26 0.00017 0.017 17.1 1.0 1 23 705 728 705 728 0.96

23 26 8.5e-05 0.0086 18.1 0.3 3 23 739 759 737 759 0.97

24 26 2.4e-06 0.00024 23.0 0.2 1 23 765 787 765 787 0.98

25 26 0.00068 0.069 15.2 2.1 1 23 793 815 793 815 0.98

26 26 0.0041 0.41 12.8 0.0 1 19 821 839 821 842 0.84

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	26	0.018	1.9	10.7	3.1	1	23	25	47	25	47	0.98
2	26	9.5e-05	0.0097	17.9	1.3	1	23	53	75	53	75	0.98
3	26	0.00026	0.027	16.5	4.0	1	23	81	104	81	104	0.98
4	26	0.0051	0.52	12.5	2.2	1	23	116	139	116	139	0.94
5	26	0.065	6.6	9.0	3.0	3	23	150	170	148	170	0.95
6	26	0.0025	0.26	13.4	0.6	1	23	176	198	176	198	0.98
7	26	1.1e-05	0.0011	20.9	0.3	1	23	204	226	204	226	0.98
8	26	0.16	17	7.7	0.1	2	15	233	246	233	249	0.84
9	26	0.011	1.1	11.5	0.2	2	23	289	310	288	310	0.94
10	26	0.12	12	8.2	6.2	1	23	316	338	316	338	0.97
11	26	0.13	13	8.1	1.0	1	11	344	354	344	366	0.79
12	26	7.6e-05	0.0077	18.2	2.1	1	23	372	395	372	395	0.97
13	26	0.0047	0.48	12.6	2.7	1	23	407	430	407	430	0.96
14	26	0.0049	0.5	12.5	0.7	2	23	440	461	439	461	0.96
15	26	0.0001	0.011	17.8	0.1	1	20	467	486	467	489	0.93
16	26	1.8e-05	0.0019	20.2	1.1	1	23	495	517	495	517	0.98
17	26	0.0073	0.74	12.0	0.0	3	22	525	544	524	544	0.93
18	26	1.3	1.4e+02	4.9	1.0	2	23	587	608	586	609	0.92
19	26	3	3e+02	3.8	1.5	1	23	614	636	614	636	0.93
20	26	0.057	5.8	9.2	2.6	1	23	642	664	642	664	0.91
21	26	0.0013	0.13	14.3	3.8	1	23	670	693	670	693	0.98
22	26	0.00017	0.017	17.1	1.0	1	23	705	728	705	728	0.96
23	26	8.5e-05	0.0086	18.1	0.3	3	23	739	759	737	759	0.97
24	26	2.4e-06	0.00024	23.0	0.2	1	23	765	787	765	787	0.98
25	26	0.00068	0.069	15.2	2.1	1	23	793	815	793	815	0.98
26	26	0.0041	0.41	12.8	0.0	1	19	821	839	821	842	0.84

Sequence Information

Coding Sequence: ATGTGCTGTGGCTCTTACAAAAACAACGTAGACTTCGCGCTGCATTCAAAAATACATTCTGAAGATGGAAAGTACTCTTGCCACTTGTGCAACTATAAAGTAAAATCTATGTTCAACTTCGAAAACCACGTGAGAGCGCATGAGAACTCCAATATGTACAAATGCGACATTTGCCACAAAGTATTTAAAGTAAGCAGTCAGGCCTTAGAGCACAGGAACATCCACACGGGCGAGAAACCTTACCAGTGTGAAATCTGTGGGAAGCATTTTACTTATTCCAGGGTTTTAAGCGCTCACAGACACACGTCTCACTACGAGGTTCTCACCGGTAAACCCCTGGTGAAATTCGACTGCAAGATCTGCAACAAGCACTACGAGTCCTACCCGGGTCTACAGAGCCACATGTATAACAAGCACAATGATACTGGCGAGGACAAATCAGTGATTTGTCATATCTGTGGGAAGAAAATCAAGAACAAGAGCAAGTTCAGATTTCACAGTAGAATACACACTGGAGACAAGCCGTATTCTTGCATGGTGTGCTCCAGAAAGTTCAGTAAGAGAGACATTCTAGTGGAGCACATGAGAATTCACACTGGAGAAAAAccgttttcatgtaaaatttgtGGGAAGGCTTTCGCGCAGCGCGCCCCGCTGTGGTATCATAGGAAAACTCATACGGGGGAGAGGCCCAATGTGTGTCCTCTTTGTGGGAAAGGGTTCATATCCAAggaAAAAATAAAACGACCAAGAGCTAAAGGTCGCAAAAGAGGACCTTACAATGTGGAGAAGAAACCTCGAAAATCCAGGCGGAAAACCCCCTTGAAGGCAGCCGTTGAACCGTTGCTGCTTGAAGAAGCTCTCCAGTGCAAATACTGCCCTTCATCGTTCAATAATAATGTCGACTTTGCGCTACATTCCATCGTGCACAGCGCTGATGAGCAATACTGCTGCCACCTATGCGACTTCACCCTGAAATCTCAGTACAGATTTGAGAAACACGTAAGAGCACACGAAGGCACCAACTTGTACAAGTGTGAAATTTGTAATAAACCTTTCAAAATAGGCACGCATGCTTTGGAACATGTGTATTTCCACAACGGGGAGAAGCCCTTTCAGTGCGAAATTTGTGGGAAACACTTCATGTACTCTAGACTGCTAAGTGCTCATAGAAGACTGTCCCACTACGAAATCCTCACAGGCAAACCTCTGGTAAAGTACGACTGCAAAATCTGCTATAAGCACTACGAGTCGTACCCAGGTCTCCAGAGGCATATGTACAGCAAACACAACGAAGCAGGTGTGGATAAGTCAGTAATGTGTGACGTATGTGGGAAGAAGATCAAGAACAAGGACAAACTAAAATTTCACCTGCGTATCCACACGGGGGATAAGCCCTTTTCGTGTATGGTATGTGGCAGAAGGTTCGCGAAAAAGGACCTACTTCAAGCCCATATGCCGGTGCACACCGGAGAGAAAccgttttcttgtaaaatttgtGGGAAAGCTTTTGCCCACAGGGCGCCGTTGTGGTATCACAGAAAGACCCACACGGGGGAGCGGCCTAATATTTGCCCTATTTGTGGCAAGGGTTTTATTTCCAAGCCTGCCATGGATAACCACGTGAAGACTTGCAAAAAGGTGAAGAGAACTAGGCGGAGAAAGGGCAACGCCAAAACAACCGCCAGAAGAACCCGACGTCGACCCGAGAAACCCAAAAAAAATGTCGTAGAGCCCGTCAAACTCGAAGTGCCTTTATACTGCCTCTACTGCGGCGCTGCCTACCACAACAATATCGACTACGCTCTGCACTCAAAGGAGCACCACCCGGAGGGCAGATACTCATGTCATTTGTGCGATTACATCAACACTTCCAAGTACCGCACGGAAGCCCACGTCAGAGCGCACGAAGGCTCGACGAAATATCGCTGCGAGATTTGCAACAAACCCTTCAATATTAGTACCCACGCCAAGGAACACAAGTACTTTCACACTGGCGAGAAACCCTTCCAGTGTGAAATTTGTGGGAAACACTTCATGTTCTCTAGAATATTGACCAAGCATCGTCGTACATCTCACTACGAAATCATGTTTGGCAAGCCATTAGCTAAATACGATTGTAAAGTTTGTGGGAAGCACTACGAATCTCTACCAGGACTCCAGAGGCACATGTACAGCAACCACAATGATACCGGGGAGGACTGGTCCGTCATTTGCGATATTTGTGGGAAGAAAATTGCCACAAAGGAAAAATTGAAGTACCATCTGCGAACGCATACTGGGGACAAGCCCTTTCCTTGCCCGGTGTGTCCCAAGAGGTTTCCTAAGAAAGACCAGCTTAAGGAGCACGAACGGGTGCATACGGGGGAGAAACCCTTCGTGTGCATGTACTGTGGTAAGAATTTTGGGCACAGAGCGCCCTATAGGTACCACATCAAGACCCACACGGGCGAGAGGCCGTACACATGCCCCATCTGTGGAAAGGGATTCATTTCTAAGGCAGCTAAAGAGGGGCATGCCAATAGTTGCTTCAAGAAATGA
Protein Sequence: MCCGSYKNNVDFALHSKIHSEDGKYSCHLCNYKVKSMFNFENHVRAHENSNMYKCDICHKVFKVSSQALEHRNIHTGEKPYQCEICGKHFTYSRVLSAHRHTSHYEVLTGKPLVKFDCKICNKHYESYPGLQSHMYNKHNDTGEDKSVICHICGKKIKNKSKFRFHSRIHTGDKPYSCMVCSRKFSKRDILVEHMRIHTGEKPFSCKICGKAFAQRAPLWYHRKTHTGERPNVCPLCGKGFISKEKIKRPRAKGRKRGPYNVEKKPRKSRRKTPLKAAVEPLLLEEALQCKYCPSSFNNNVDFALHSIVHSADEQYCCHLCDFTLKSQYRFEKHVRAHEGTNLYKCEICNKPFKIGTHALEHVYFHNGEKPFQCEICGKHFMYSRLLSAHRRLSHYEILTGKPLVKYDCKICYKHYESYPGLQRHMYSKHNEAGVDKSVMCDVCGKKIKNKDKLKFHLRIHTGDKPFSCMVCGRRFAKKDLLQAHMPVHTGEKPFSCKICGKAFAHRAPLWYHRKTHTGERPNICPICGKGFISKPAMDNHVKTCKKVKRTRRRKGNAKTTARRTRRRPEKPKKNVVEPVKLEVPLYCLYCGAAYHNNIDYALHSKEHHPEGRYSCHLCDYINTSKYRTEAHVRAHEGSTKYRCEICNKPFNISTHAKEHKYFHTGEKPFQCEICGKHFMFSRILTKHRRTSHYEIMFGKPLAKYDCKVCGKHYESLPGLQRHMYSNHNDTGEDWSVICDICGKKIATKEKLKYHLRTHTGDKPFPCPVCPKRFPKKDQLKEHERVHTGEKPFVCMYCGKNFGHRAPYRYHIKTHTGERPYTCPICGKGFISKAAKEGHANSCFKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -