Phis007594.1
Basic Information
- Insect
- Pogonocherus hispidulus
- Gene Symbol
- -
- Assembly
- GCA_963924545.1
- Location
- OZ004692.1:115855391-115871943[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 29 0.003 0.31 13.2 0.7 1 23 47 70 47 70 0.98 2 29 0.0075 0.76 11.9 4.1 1 23 80 103 80 103 0.93 3 29 0.0094 0.95 11.6 1.5 3 23 114 134 113 134 0.99 4 29 9.1e-06 0.00092 21.1 1.5 1 23 140 162 140 162 0.98 5 29 6e-06 0.0006 21.7 1.8 1 23 168 190 168 190 0.98 6 29 1.1 1.1e+02 5.1 0.0 1 22 196 217 196 217 0.89 7 29 2.4 2.4e+02 4.1 0.2 2 23 275 296 274 296 0.94 8 29 0.62 63 5.9 3.0 1 23 302 324 302 324 0.97 9 29 0.0089 0.9 11.7 2.3 1 23 330 352 330 352 0.91 10 29 0.00042 0.042 15.9 3.6 1 23 358 381 358 381 0.98 11 29 0.00042 0.043 15.9 3.5 1 23 393 416 393 416 0.94 12 29 0.031 3.1 10.0 0.9 3 23 427 447 426 447 0.98 13 29 1.4e-05 0.0014 20.5 2.2 1 23 453 475 453 475 0.97 14 29 3.4e-05 0.0034 19.3 0.1 1 21 481 501 481 502 0.95 15 29 0.0099 1 11.6 0.3 2 23 537 558 536 558 0.96 16 29 0.21 21 7.4 1.6 1 23 593 615 593 615 0.89 17 29 0.0005 0.051 15.6 3.6 1 23 621 644 621 644 0.97 18 29 8.6e-05 0.0087 18.1 2.1 1 23 656 679 656 679 0.96 19 29 0.0048 0.48 12.6 1.3 3 23 688 708 687 708 0.99 20 29 1.6e-05 0.0016 20.4 0.2 3 23 716 736 714 736 0.97 21 29 1.3e-05 0.0013 20.7 1.4 1 23 742 764 742 764 0.99 22 29 0.21 22 7.4 0.5 2 23 890 911 889 911 0.91 23 29 0.11 11 8.3 1.4 1 23 917 939 917 939 0.98 24 29 0.0057 0.58 12.3 0.4 1 23 945 967 945 967 0.93 25 29 0.027 2.7 10.2 4.4 1 23 973 996 973 996 0.92 26 29 0.00054 0.055 15.5 1.5 1 23 1007 1030 1007 1030 0.97 27 29 7.8e-05 0.0079 18.2 0.9 3 23 1039 1059 1037 1059 0.97 28 29 8.3e-06 0.00084 21.2 0.7 3 23 1067 1087 1066 1087 0.99 29 29 8.9e-05 0.009 18.0 0.4 1 23 1093 1115 1093 1115 0.98
Sequence Information
- Coding Sequence
- atGGAAAAGCATTTTGTAGAagACGACGTTAACAACATAGACTTGAAGTTATCTTTTGTTGAAGAACCCACAGAACTGACAAACTCGTATACTGTGAACACCACACAACAGAATAAGTCCTCTACAGGGAAAAGAACATTTCAGTGTAAACTATGCGAGGAACAGTTCAAGTCACCCAACATTTTATTCGCTCACCGTAGAACCGAGCACTGGGAGACCTTGGGTCCACTATCGAAATTCGACTGCCCCATCTGCTACAAGCATTTTGTTTCCTTCAAGACACTGACGCGGCACAAGTACAGCCAACATAGATCTACAAATGTAGATCCGTCAGTGCTATGTGACATATGTGGGAAAAAACTATCAAGTAACCAGAAGTTGAAGTTTCATCTCAGAACACACACCGGCTACAAACCCTTCTCCTGCGAGATGTGTTCCAAAAGTTTCTCCAAAAAAGAGCAGCTGAAAGAGCACGAGAGAGTGCACACGGGCGAGAAGCCCTTCATCTGCAAGTATTGCGGCAAGGGCTTCAGCCAAAGAACTCCCCTTACGACACATAAGAGAACCCACACTGGGGAGCGGCCTTACGCGTGTATCATCTGCGGCAGAGGATTCATATCGAAGGGGGCGAAAGACGCGCACATTAAGACCTGTTATCCGGCGTTTCCCACGAAGTTGAGCCCACCTTGGGAACCCGATGACGAGAAACCCAAGAAAATTCGCAAGACTCGCAAAGCTCGAAAAGACAAGAAGGACAACAAGGCTAAAAGGAAAAAGATTGACATAGTCCACCCTCCGCCCATCGAGTTGGACGAACCAATCCAATGCGACGTTTGCAGTGACACCTACAAGAACAACGTCGCCTTTTCTCTACATTCCATCAGCCACAGCGAAGACGGCAAGTACTCTTGTCACATATGCAACTATAGGAACGCCTCCAAATACCACATAGAAATGCACGTAAGAGCTCACGAAGGCACGACCAGTTACAAATGTGAGATTTGCAACAAGGCGTTTACGGTCAGCACGCACGCTATGGAGCACAAATATTTCCATTCAGGAGAGAAGCCGTTCCAGTGCGAAATCTGCGGAAAACACTTCATGTTCTCCAGATTCCTCGCGTCGCATCGCCGAACTCAGCACTGGGAAATCATCACTGGCACGCCTCTCATCAAGTACGACTGCACCATTTGCAAGAAGCACTACACCTCCTCCAGCGGTTTGAAGAGGCATAACCTGAGGAACCACAACACTGAAGGCATAGACACTTCCGTCCTCTGCGACATCTGCGGAAAGAAGATCTCGAGCAACGAGAAGCTGAAATTCCACAGAAGGGTTCATACTGGATATAAACCCTTCGCCTGCGAGGTCTGCGGCAAGTGCTTCTCCACGAAAGAGCAGAAAAAGGAACACCTCAGGGTGCACACTGGAGAGAAGCCGTACATCTGCAAGTATTGCGGCAAGGGCTTCACCCAGAGGTCTCCTCTCAAAATTCATGAGAGGGCCAAAAGTACTAGAAAGAAACGACACTTGTCACAAAAGCTGAAGAGCAAAAAGTCAAAGAAAACAGAAGAACACCCCCCACCCCTAAAACTAGAACAACCGATCCAGTGCGACGACTGCGAGCAGTACTTCACCAACAACGTTGACTTTGCAATACATTCAAAGAACCACGACAGCGATGGGAAATATCGGTGTCATTTATGTATCAATTTCCGGAACGCTTCCAAGTACCAAATAGAGATGCACGTGAGAGCTCACGAGGGCACCACTAGGTACAAATGCGAGATCTGCAACCAGGGCTTCACCATAAGCACCCACGCCATTGAGCACAAGTATTTCCACACTGGCGAGAAGCCTTTCCAGTGCGAGATCTGCGGAAAGCACTTCATGTACTCCTGGTTCCTCTCCAGGCATCGAAAGTCGACACACTACGAGATTCTGACTGGTAGCCCTTTAGTGAAGTACGACTGCCCAATTTGTAAGAAGCACTACGCGACAGCCTCCAGTTTAAGCAGACACAAGCAAAGCAAGCACAAGAAGATCGACGGATCTGTTCTATGCGACATCTGCGGAAAGAGATTATCCAGCAGAGAGAAGCTCAAGTTCCATTTGAGAACCCACACGGGGTATAAACCCTACGGTTGCACCGTGTGTCCGAAGAGCTTTTCCAAGAAAGACCAGCTGGTGGAGCATGTTCGGGTGCACACCGGGGAGAAGCCCTACGTTTGCAAGTACTGCGGGAGGGGTTTCACCCAGAGAACGCCGCTGAAGACGCACGAGAAGACGCATATTCGAGACGAGATGAATGTTGGGTGTTCGGTGTGTGGCCCTAGTGGGAGTTGTGGGCATATTCAGAACTACCCACTACCGGCGCCTTTTACTTACAACTTTGAACCAAgaaACAAGTTTCTATTGATCACACGAAACAGGATTTCGAAAACTGGACAAGAAGCCACCATTGTATATCTTACCAAAACAAGTACTAATCTGGAAGGAACCCATTCTGATTCAACCATCTCCAAGCAAATAGCGCTGGATCAATTTTACCAGAATTTACTAGCCAACGTATCAGAGAAGAAAGTAAGAAAGTCCCGTCGCAAAAGCTCCAACCCCAGGAAAATTGGGCCTGATCACCCTCCCCTAGTGCAGCTGGAAGAACCTTTGCGATGCGACAAGTGTGAGGCGGCTTACACCACCAACGTACACTTCGCTCTTCACTCCTTAGACCACAGCGAAGATGGGAAGTATACCTGCCACGTGTGCAGCTTCAAGATACAATCGAAGTATGGCTTGGAAATGCACGTCAGGGCCCACGAAGGCACCACCAAGTTCAAATGCGAAATATGCGACAAGGCTTTCGCAGTAAGCAATCTTGCTAAGCAGCACAAGTACCTCCACACTGGAGAGAAGCCCTTTCAGTGCGAGATCTGCGGAAAACACTACTTTACATCCAAGAGACTGAGTTCTCATCGTCATGATGCGCACTACGAAGCCATAACTGGTTACCCATTGAACTACGACTGCACGGTTTGTAATAAACGATATACCACGGCCCTTGGTCTGAAGAAACACAAGTTAACCAAGCACGAAAACGCAGATCTGTCCGTCATCTGTGAAACTTGTGGGAAGAGACTGTCcagcaaagaaaagttgaagTACCACTTAAGGACTCATACTGGGTACAAACCTCATGGTTGTCACATTTGTCCAAAGATGTTTTCTAAGAAGGAACAGCTGGTGGAACACATTCGAATTCACACTGGCGAGAAACCCTTCATCTGTAGATATTGTGGGAGGGGGTTCGCTCAGAGGACCCCTTTGAAGGTTCATGAAAGGACGCACACTCGGAAGCTTCTTCATGGAGATGAACACTTTGGAGACATCGTTGTTTCTAaggaataa
- Protein Sequence
- MEKHFVEDDVNNIDLKLSFVEEPTELTNSYTVNTTQQNKSSTGKRTFQCKLCEEQFKSPNILFAHRRTEHWETLGPLSKFDCPICYKHFVSFKTLTRHKYSQHRSTNVDPSVLCDICGKKLSSNQKLKFHLRTHTGYKPFSCEMCSKSFSKKEQLKEHERVHTGEKPFICKYCGKGFSQRTPLTTHKRTHTGERPYACIICGRGFISKGAKDAHIKTCYPAFPTKLSPPWEPDDEKPKKIRKTRKARKDKKDNKAKRKKIDIVHPPPIELDEPIQCDVCSDTYKNNVAFSLHSISHSEDGKYSCHICNYRNASKYHIEMHVRAHEGTTSYKCEICNKAFTVSTHAMEHKYFHSGEKPFQCEICGKHFMFSRFLASHRRTQHWEIITGTPLIKYDCTICKKHYTSSSGLKRHNLRNHNTEGIDTSVLCDICGKKISSNEKLKFHRRVHTGYKPFACEVCGKCFSTKEQKKEHLRVHTGEKPYICKYCGKGFTQRSPLKIHERAKSTRKKRHLSQKLKSKKSKKTEEHPPPLKLEQPIQCDDCEQYFTNNVDFAIHSKNHDSDGKYRCHLCINFRNASKYQIEMHVRAHEGTTRYKCEICNQGFTISTHAIEHKYFHTGEKPFQCEICGKHFMYSWFLSRHRKSTHYEILTGSPLVKYDCPICKKHYATASSLSRHKQSKHKKIDGSVLCDICGKRLSSREKLKFHLRTHTGYKPYGCTVCPKSFSKKDQLVEHVRVHTGEKPYVCKYCGRGFTQRTPLKTHEKTHIRDEMNVGCSVCGPSGSCGHIQNYPLPAPFTYNFEPRNKFLLITRNRISKTGQEATIVYLTKTSTNLEGTHSDSTISKQIALDQFYQNLLANVSEKKVRKSRRKSSNPRKIGPDHPPLVQLEEPLRCDKCEAAYTTNVHFALHSLDHSEDGKYTCHVCSFKIQSKYGLEMHVRAHEGTTKFKCEICDKAFAVSNLAKQHKYLHTGEKPFQCEICGKHYFTSKRLSSHRHDAHYEAITGYPLNYDCTVCNKRYTTALGLKKHKLTKHENADLSVICETCGKRLSSKEKLKYHLRTHTGYKPHGCHICPKMFSKKEQLVEHIRIHTGEKPFICRYCGRGFAQRTPLKVHERTHTRKLLHGDEHFGDIVVSKE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -