Basic Information

Insect: Pogonocherus hispidulus
Gene Symbol: -
Assembly: GCA_963924545.1
Location: OZ004692.1:115837995-115844347[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 29 4.3e-05 0.0043 19.0 0.8 2 23 45 66 44 66 0.96

2 29 2.7e-06 0.00027 22.8 1.5 1 23 72 94 72 94 0.98

3 29 0.011 1.1 11.4 1.3 1 23 100 122 100 122 0.98

4 29 0.084 8.5 8.7 0.7 2 23 129 151 128 151 0.95

5 29 0.00025 0.025 16.6 2.6 1 23 156 178 156 178 0.96

6 29 0.34 35 6.7 0.6 2 23 189 211 188 211 0.92

7 29 0.00029 0.029 16.4 1.3 1 23 218 240 218 240 0.97

8 29 2.4e-06 0.00024 23.0 1.1 2 23 247 268 246 268 0.97

9 29 5.2e-07 5.3e-05 25.0 1.6 1 23 274 296 274 296 0.97

10 29 2e-05 0.002 20.0 0.9 2 23 332 353 331 353 0.96

11 29 2.9e-05 0.003 19.5 1.1 1 23 359 381 359 381 0.98

12 29 0.0034 0.34 13.0 1.6 1 23 387 409 387 409 0.98

13 29 0.0011 0.11 14.6 0.2 2 23 416 438 415 438 0.94

14 29 0.0011 0.11 14.5 1.5 1 23 443 465 443 465 0.96

15 29 0.0057 0.58 12.3 0.3 2 23 476 498 475 498 0.95

16 29 0.00071 0.072 15.2 1.1 1 23 505 527 505 527 0.97

17 29 3.7e-06 0.00038 22.3 0.9 2 23 534 555 533 555 0.97

18 29 6e-07 6.1e-05 24.8 0.8 1 23 561 583 561 583 0.98

19 29 0.011 1.1 11.4 4.1 1 23 589 611 589 612 0.95

20 29 0.00032 0.032 16.3 1.0 2 23 644 665 643 665 0.95

21 29 1.1e-05 0.0011 20.9 1.5 1 23 671 693 671 693 0.98

22 29 0.0024 0.24 13.5 1.2 1 23 699 721 699 721 0.98

23 29 0.019 1.9 10.7 0.4 2 23 728 750 728 750 0.95

24 29 0.00047 0.047 15.7 2.7 1 23 755 777 755 777 0.96

25 29 0.035 3.5 9.8 3.2 2 23 788 810 787 810 0.93

26 29 5.7e-05 0.0057 18.6 1.0 1 23 817 839 817 839 0.98

27 29 0.00054 0.055 15.5 2.1 2 23 846 867 845 867 0.94

28 29 1.2e-06 0.00012 23.9 0.9 3 23 875 895 873 895 0.97

29 29 5e-05 0.0051 18.8 0.4 1 23 901 923 901 923 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	29	4.3e-05	0.0043	19.0	0.8	2	23	45	66	44	66	0.96
2	29	2.7e-06	0.00027	22.8	1.5	1	23	72	94	72	94	0.98
3	29	0.011	1.1	11.4	1.3	1	23	100	122	100	122	0.98
4	29	0.084	8.5	8.7	0.7	2	23	129	151	128	151	0.95
5	29	0.00025	0.025	16.6	2.6	1	23	156	178	156	178	0.96
6	29	0.34	35	6.7	0.6	2	23	189	211	188	211	0.92
7	29	0.00029	0.029	16.4	1.3	1	23	218	240	218	240	0.97
8	29	2.4e-06	0.00024	23.0	1.1	2	23	247	268	246	268	0.97
9	29	5.2e-07	5.3e-05	25.0	1.6	1	23	274	296	274	296	0.97
10	29	2e-05	0.002	20.0	0.9	2	23	332	353	331	353	0.96
11	29	2.9e-05	0.003	19.5	1.1	1	23	359	381	359	381	0.98
12	29	0.0034	0.34	13.0	1.6	1	23	387	409	387	409	0.98
13	29	0.0011	0.11	14.6	0.2	2	23	416	438	415	438	0.94
14	29	0.0011	0.11	14.5	1.5	1	23	443	465	443	465	0.96
15	29	0.0057	0.58	12.3	0.3	2	23	476	498	475	498	0.95
16	29	0.00071	0.072	15.2	1.1	1	23	505	527	505	527	0.97
17	29	3.7e-06	0.00038	22.3	0.9	2	23	534	555	533	555	0.97
18	29	6e-07	6.1e-05	24.8	0.8	1	23	561	583	561	583	0.98
19	29	0.011	1.1	11.4	4.1	1	23	589	611	589	612	0.95
20	29	0.00032	0.032	16.3	1.0	2	23	644	665	643	665	0.95
21	29	1.1e-05	0.0011	20.9	1.5	1	23	671	693	671	693	0.98
22	29	0.0024	0.24	13.5	1.2	1	23	699	721	699	721	0.98
23	29	0.019	1.9	10.7	0.4	2	23	728	750	728	750	0.95
24	29	0.00047	0.047	15.7	2.7	1	23	755	777	755	777	0.96
25	29	0.035	3.5	9.8	3.2	2	23	788	810	787	810	0.93
26	29	5.7e-05	0.0057	18.6	1.0	1	23	817	839	817	839	0.98
27	29	0.00054	0.055	15.5	2.1	2	23	846	867	845	867	0.94
28	29	1.2e-06	0.00012	23.9	0.9	3	23	875	895	873	895	0.97
29	29	5e-05	0.0051	18.8	0.4	1	23	901	923	901	923	0.99

Sequence Information

Coding Sequence: ATGTATACGCTCCTTGGGTACTTGAAGACTGAACTATTAATAGATTGGTGCAAAAGGGAGAAAACGACATCGAAGCCCACTGTTAAAAAAAATGCCGTTAAGAAAGAAACCGGGACATCGAAAACCATAAAAAGTTGCGATGTTTGCGGAAAAATATTCGCCAACTTGAGAAAACTGAAGAGGCACCTATCCTCCCACAATGAAGAACGTCCGTATTCCTGCAACTTGTGCGGTAAAAAGTTTAAGACAAAGTACCAAGTGGCGACACATTTGCGAGTGCACGACGAAAACATATCCTTTGAATGTGACTTCTGCTCCAAGAAGCTCCGGTCTAAGGGCTCTTGGGTGATACACAGGAAAAGACACTTAAAGGAGTATGTAATAAAATGTGAAGTCTGCGAGCAAGGCTTCGTCACAAACGATGAGTGTAGCAACCACATGGCTTCTAAGCACAGCATCAGCAACCACATCTGCAACATCTGCGGAAGGGGCTGCTACAATAAGACTGCCCTAAGGAGTCACATGGCACGCCATGCCGAAGACTATAAGACTAACCAGACCATCAAGTGCGTCATTTGCGAGAAAACTTTCCTCCAAGAGCAGTACATGAGACAACACGTGACCAGGATGCACAAGGATGGAGGGCAAAGGTACATATGCGACCTTTGTGGGAAGAATCTGCACTCCAAGAGCAGCCTGAGAGACCACATGTACATACACAAAGGAGTCAGGCCCGTGGAATGTAAAGAGTGCGGGAAAAATTTTGTACTGAAGACTACTCTGAAGTCGCATATGAGGACTCATACCGGGGAGAGGCCGTACAGTTGTAAGGATTGTGGGAAATCGTTCACGCAAAGGGGAGCTTTGAATACTCACATATTGCACCATACTGGGGAGAGACCCCACAAgtgcaaaaggaagaaaagaaaatcgaagTCAACTGTTAAAAAAAATCCCGTTGAGAAAGAAACCGGGACATCGAAAACCATAAAAAGTTGCGATGTTTGCGGAAAAGTATTCGCCAACTTGAGAAAACTGAAGAGGCACCTAACCTCCCACAATGAAGAACGTCCGTATTCCTGCAACTTGTGTGGTAAAAAGTTTAAGAGGAAGTACCAAGTGGTGCCACATATGCGAGTGCACGACGGAAACATGTCCTTTGAATGCGATTTCTGCTCCAAGAAACTGAGATCTAAGGGCTCTTGGATGATACACAGGAGAAGACACTTAAAGGAGTACGTGGTAAAGTGTGAAGTCTGCGGGCAAGGCTTCGTCACAAACCAGGAGTATAGTAACCACATGGGCTCTAAGCACAGCACCAGCAACCACATCTGCAACATCTGCGGAAGGGGCTGCTACGATAAGGGTGTCCTAAGGAGCCACATGGCACGCCATGCCGATGACTATGAGACTAACCAGAGCATCAAGTGCGTCGTTTGCGGGAAAACTTTCCTCCAAGAGAAGTACTTGAGGCAACACGTAATAAGGATGCACAAGGATGGAGGGCAGAGGTACATGTGCGACCTTTGTGGGAAGAATCTGCACTCCAAGGGCAGCCTGAGAGACCACATGTACATACACAAAGGAGTCCGGCCCGTGGAATGTAAAGAGTGCGGAAAAAATTTTGTACTGAAGACTACCCTCAAGTTGCACATGAGGACTCATACCGGGGAGAGGCCGTACAGTTGTAAAGATTGTGGAAAATCGTTCACGCAAAGAGGACCTTTGAACACTCACATGTTGTACCATACTGGGGAGAGGCCCCACAAGTGTGAAATTTGCTCTATGGGGTTCGTGACCAAGACGTTGTTACTCAGCCATAATAAGAAACATCACGATGTCATGTATAAGAAGAATGCGAAAACTTCTAATGCCAAGACGAAAAGCAATAGCATCAAGCGACAAACCAAGGCATCCAAGCCAACCAAGAGCTGTACAATTTGCGGAAAAGCCTTTACAGACGTCAGAAGGCTCAAGAGGCATTTCATTTCCCATAGTGACGAGAGGCCTTTTTCTTGCAACCTGTGCACCAGGACGTTCAAGATGAAGTTCCAACTAGCAGCACATATGCGCGTACACGATGGAAACATGTCTTTTGAGTGCGATTTCTGCTCCAAGAAACTGAGATCTAAGGGCTCCTGGATCGTCCACAGACGAAGACACTTGAAGGAGTACGTAGCCAAGTGTGAATTATGCGAGCAAGGCTTCGTCACAAACCAGGAGTATAGTAACCACATGGGCTCTAAGCACAGCACCAGTAACCACATCTGCAGCTTCTGCGGCAGGGGCTGTTACGATAAGTCTGCCCTTCAGAGCCACATGGCACGTCACGCAAGCGACTACGGAACCAATCAAAACATCCGATGCAAACTGTGCGACAAGACTTTCCTTCAAGAAAAGTACCTGAAGCACCACTTTCTTAGGGTTCACAAAAATGGGGGGCAGAGGTTCGTGTGCGATCATTGCGGCAAAGAAGTGAACTCCAAAAGGAGCCTTCGCGATCATCAGCTGATACATGAGGGCCTCAAGCCTTTACAGTGCATTGAATGCGGCAGGTGTTTCGTCCTGAGGACCACTTTGAAGCTACATATGAGAACTCATACGGGGTACAGGCCTTATGGGTGTACTCAGTGTGGGAAGAGGTTCACGCAGAAATCTGCGCTTACTGTGCACTTGAGATATCATACAGGGGAGAGACCGTACGAGTGTACCGTTTGTTACAAAGGGTTTGTTAGCAAGGGGGCGCTGTCCATACACCAGAAGAAGCATTGA
Protein Sequence: MYTLLGYLKTELLIDWCKREKTTSKPTVKKNAVKKETGTSKTIKSCDVCGKIFANLRKLKRHLSSHNEERPYSCNLCGKKFKTKYQVATHLRVHDENISFECDFCSKKLRSKGSWVIHRKRHLKEYVIKCEVCEQGFVTNDECSNHMASKHSISNHICNICGRGCYNKTALRSHMARHAEDYKTNQTIKCVICEKTFLQEQYMRQHVTRMHKDGGQRYICDLCGKNLHSKSSLRDHMYIHKGVRPVECKECGKNFVLKTTLKSHMRTHTGERPYSCKDCGKSFTQRGALNTHILHHTGERPHKCKRKKRKSKSTVKKNPVEKETGTSKTIKSCDVCGKVFANLRKLKRHLTSHNEERPYSCNLCGKKFKRKYQVVPHMRVHDGNMSFECDFCSKKLRSKGSWMIHRRRHLKEYVVKCEVCGQGFVTNQEYSNHMGSKHSTSNHICNICGRGCYDKGVLRSHMARHADDYETNQSIKCVVCGKTFLQEKYLRQHVIRMHKDGGQRYMCDLCGKNLHSKGSLRDHMYIHKGVRPVECKECGKNFVLKTTLKLHMRTHTGERPYSCKDCGKSFTQRGPLNTHMLYHTGERPHKCEICSMGFVTKTLLLSHNKKHHDVMYKKNAKTSNAKTKSNSIKRQTKASKPTKSCTICGKAFTDVRRLKRHFISHSDERPFSCNLCTRTFKMKFQLAAHMRVHDGNMSFECDFCSKKLRSKGSWIVHRRRHLKEYVAKCELCEQGFVTNQEYSNHMGSKHSTSNHICSFCGRGCYDKSALQSHMARHASDYGTNQNIRCKLCDKTFLQEKYLKHHFLRVHKNGGQRFVCDHCGKEVNSKRSLRDHQLIHEGLKPLQCIECGRCFVLRTTLKLHMRTHTGYRPYGCTQCGKRFTQKSALTVHLRYHTGERPYECTVCYKGFVSKGALSIHQKKH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -