Phis029022.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pogonocherus hispidulus
Gene Symbol
-
Assembly
GCA_963924545.1
Location
OZ004697.1:1072492-1076418[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 36 0.00054 0.055 15.5 0.5 1 23 10 32 10 32 0.98
2 36 0.0001 0.01 17.8 1.5 1 19 41 59 41 60 0.99
3 36 0.00039 0.04 16.0 1.5 1 19 79 97 79 98 0.99
4 36 0.042 4.2 9.6 0.5 1 19 117 135 117 136 0.98
5 36 0.00039 0.04 16.0 1.5 1 19 155 173 155 174 0.99
6 36 0.00039 0.04 16.0 1.5 1 19 193 211 193 212 0.99
7 36 0.0048 0.49 12.5 0.6 1 19 231 249 231 250 0.99
8 36 0.00039 0.04 16.0 1.5 1 19 269 287 269 288 0.99
9 36 0.00039 0.04 16.0 1.5 1 19 307 325 307 326 0.99
10 36 0.00039 0.04 16.0 1.5 1 19 345 363 345 364 0.99
11 36 0.00039 0.04 16.0 1.5 1 19 383 401 383 402 0.99
12 36 0.0048 0.49 12.5 0.6 1 19 421 439 421 440 0.99
13 36 0.00039 0.04 16.0 1.5 1 19 459 477 459 478 0.99
14 36 0.00039 0.04 16.0 1.5 1 19 497 515 497 516 0.99
15 36 0.00027 0.027 16.5 2.4 1 22 535 556 535 558 0.90
16 36 0.00098 0.1 14.7 0.7 1 23 573 596 573 596 0.93
17 36 0.54 54 6.1 0.9 1 23 611 633 611 633 0.98
18 36 0.032 3.2 10.0 0.8 1 23 642 664 642 664 0.98
19 36 0.0001 0.011 17.8 2.4 1 23 673 695 673 695 0.98
20 36 0.00024 0.024 16.7 0.7 1 21 704 724 704 725 0.96
21 36 0.00054 0.055 15.5 0.5 1 23 732 754 732 754 0.98
22 36 0.00039 0.04 16.0 1.5 1 19 763 781 763 782 0.99
23 36 0.00098 0.1 14.7 0.7 1 23 801 824 801 824 0.93
24 36 0.032 3.2 10.0 0.8 1 23 870 892 870 892 0.98
25 36 0.00012 0.012 17.6 3.1 1 23 901 923 901 923 0.98
26 36 0.00024 0.024 16.7 0.7 1 21 932 952 932 953 0.96
27 36 0.00054 0.055 15.5 0.5 1 23 963 985 963 985 0.98
28 36 0.0001 0.01 17.8 1.5 1 19 994 1012 994 1013 0.99
29 36 0.0018 0.18 13.9 2.0 1 19 1032 1050 1032 1051 0.99
30 36 0.00091 0.092 14.8 1.9 1 19 1070 1088 1070 1093 0.96
31 36 0.00023 0.023 16.7 1.5 1 19 1108 1126 1108 1126 0.98
32 36 0.0001 0.01 17.8 1.5 1 19 1146 1164 1146 1165 0.99
33 36 0.00021 0.021 16.9 0.8 1 23 1184 1206 1184 1206 0.98
34 36 0.11 11 8.3 0.4 1 23 1215 1237 1215 1237 0.98
35 36 2.6e-05 0.0026 19.7 3.1 1 23 1246 1268 1246 1268 0.99
36 36 0.0073 0.74 12.0 4.8 1 23 1277 1299 1277 1299 0.98

Sequence Information

Coding Sequence
ATGTCGAACCGTAAAGAAATTCAGGAGTacgaatgtgatttatgtggtTATAAGTCAAAGCTGAAACCCTACTTGAGAAGGCATATGTTGATCCATATACGTCCACCCAAAGTACAGTACTATGAATGTAATTTATGTGACCAGAAGTTTAAGTCGAAAAGTGATTTAAAGAAACACGACACGTTGACTCATAAAGAGCTGTTGACTCAGAAACTTCCATCCGAAATACAATATTATGAATGTAATTTATGTGACCAGAAGTTTAAGTCGAAAACTGATTTGAAGAAACACGACACGTTGACACATGAAGAGCTGTTGACTCAGAAACTTCCATCCGAAATACAATATTATGAATGTAATTTATGTGACCAGAAGATTAAGTCGAAAACTGATTTGAAGACACACGACACGTTGACACATAAAGATCTGTTGACTCAGAAACTTCCATCCGAAATACAATATTATGAATGTAATTTATGTGACCAGAAGTTTAAGTCAAAAACTGATTTGAAGAAACACGACACGTTGACACATGAAGATCTGTTGACTCAGAAACTTCCATCCGAAATACAATATTATGAATGTAATTTATGTGACCAGAAGTTTAAGTCGAAAACTGATTTGAAGAAACACGACACGTTGACACATGAAGATCTGTTGACTCAGAAACTTCCATCCGAAATACAATATTATGAATGTAATTTATGTGACCAAAAGATTAAGTCGAAAAGTGATTTAAAGAAACACGACACGTTGACTCATAAAGAGCTGTTGACTCAGAAACTTCCATCCGAAATACAATATTATGAATGTAATTTATGTGACCAGAAGTTTAAGTCGAAAACTGATTTGAAGAAACACGACACGTTGACACATGAAGATCTGTTGACTCGGAAAATTCCATCCGAAATACAATATTATGAATGTAATTTATGTGACCAGAAGTTTAAGTCGAAAACTGATTTGAAGAAACACGACACGTTGACACATGAAGATCTGTTGATTCAGAAACTTCCATCCGAAATACAATATTATGAATGTAATTTATGTGACCAGAAGTTTAAGTCGAAAACTGATTTGAAGAAACACGACACGTTGACACATGAAGATCTGTTGACTCAGAAACTTCCATCCGAAATACAATATTATGAATGTAATTTATGTGACCAGAAGTTTAAGTCGAAAACTGATTTGAAGAAACACGACACGTTGACACATAAAGATCTGTTGACTCAGAAACTTCCATCAGAAATACAATATTATGAATGTAATTTATGTGACCAAAAGATTAAGTCGAAAAGTGATTTAAAGAAACACGACACGTTGACTCATAAAGAGCTGTTGACTCAGAAACTTCCATCCGAAATACAATATTATGAATGTAATTTATGTGACCAGAAGTTTAAGTCGAAAACTGATTTGAAGAAACACGACACGTTGACACATGAAGATCTGTTGACTCGGAAAATTCCATCCGAAATACAATATTATGAATGTAATTTATGTGACCAGAAGTTTAAGTCGAAAACTGATTTGAAGAAACACGACACGTTGACACATGAAGATCTGTTGATTCAGAAACTTCCATCCGAAATACAATATTATGAATGTAATTTATGTGACCAGAAGTTTAAGTCGAAAACTGATTTGAAGAAACACAACACGTTGACACATGAAGATCTGTTGACTCAGAAACTTCCATCCGAAATACAATATTATGAATGTAATTTATGTGACCAGAAGATTAAGTCGAAAAGTGATTTGAAGAAGCACAACATGTTGATACATAAAGATCAGTTGACTCAGAAACATCCatccaaaataaaatactatgaATGCTATTTGTGTGACTTTAGGTCAAAGTGGAGTACTGGTTTGAAGAAACACGTATTGACACATAAAGATATTTCCGAAATACAATgctataaatgcaatttatgtgactataaggcAAAGTGGAAAACTAGTTTGAAGAATCACATATTGATACATAAAGATTTTTCCGAAATACAAAACTATAAGTgcaatttatgtgactataagacAAACCGGAAGGGTAGTTTGAAGGCCCACATGTTCAAACATATACATCGTTCCGAAAAAAAATACTATGAATgcaatttatgtgactataagtcaaaaCAGAAAGGTAATTTGAAAAATCACATGTCGAACCGTAAAGAAATTCAGGAGTacgaatgtgatttatgtggtTATAAGTCAAAGCTGAAACCCTACTTGAGAAGACATATGTTGATCCATATACGTCCACCCGAAGTACAATACTATGAATGTAATTTATGTGACCAGAAGTTTAAGTCTAAAACTGATTTGAAGAAACACGACACGTTGACACATAAAGATCTGTTGACTCAGAAACTTCCATCCGAAATACAATATTATGAATGTAATTTATGTGACCAGAAGATTAAGTCGAAAAGTGATTTGAAGAAGCACAACATGTTGATACATAAAGATCAGTTGACTCAGAAACATCCatccaaaataaaatactatgaATGTTATTTGTGTGACTTTAGGTCAAAGTGGATTACTGGTTTTAAGAAACACGTATTGACACATAAAGATCTTTCCGAAATACAATgctataaatgcaatttatgtgactataaggcAAAGTGGAAAACTAGTTTGAAGAATCACATATTGATACATAAAGATTTTTCCGAAATACAAACCTATAAGTgcaatttatgtgactataagacAAAGCGGAAGGGTAGTTTGAAGGTCCACATGTTCAAACATATACATCGTTCCGAAAAAAAGTACTATGAATgcaatttatgtgactataagtcgAAACAGAAAGGTAATTTGAAAAATCACATGTCGAACCGTAAAGATCTTTCAAAAATTCAGGGGTacgaatgtgatttatgtggtTATAAGTCAAAGCTGAAACCCTACTTGAGAAGGCATATGTTGATCCATATACGTCCACACGAAGTACAATACTATGAATGTAATTTATGTGACCAGAAGTTTAAGTCGAAAAGTGATTTGAAGAAACACGACACGTTGACACATAAAGATCTGTTGCCTCAAAAACATCCATCCGAAATACAATACTATGAATGCAGTTTATGTTACCAGAAGTTTAAGTCGAAAAGTGATTTAAAGAAACACGACACGTTGACTCATAAAGAGCAATTGCCTCATAAACATCCATCCGAAATACAATATTATGAATGTAATTTATGTGACCAGAAGTTTAACTCGAAAACTGATTTGAAGAAACATGACATGTTCACACATAAAGATCTGTTGACTCAGAAACTTCCATCCGAAATGCAATTTTATGAATGTAATTTATGTGACCAGAAGTTTAAGTCGAAAAGTGATTTGAAGCAACATGACACTTTCACACATAAAGAGCTGTTGCCTCAAAAACATCCATCCGAAATACAATATTATGAATGTAATTTATGTGACCAGAAGTTTAAGTCGAAAAGTGATTTGAAGAAACACGACACATTGACACATAAAGATCTGTTGGCTCAGAAACATCCATCCGAAATACAATATTATGAATgtaatttatgtgactataactCAAAGAGGAAAGGTGGTTTGAAGAAACACGTGTTGACACACAAAGATATTTCCGAAATACAATgctataaatgcaatttatgtgactataaggcAAAGTGGGAAACTAGTTTGAAGAATCACATATTGATACATAAAGATTTTTCCGAAATACAAAACTATAAGTgcaatttatgtgactataagtcaaaaCGGAaagctaatttaaaaaatcacatgtCGAAACATAAAGATTCTTCAGAAATTCAGTGGCacaaatgtgatttatgtggtTATAAGTCAAAGCTGAAAAGCTATTTGAGAAAGCATAAGTTGACCCATAAACATTCATCAAGAGtacaatatatgtaa
Protein Sequence
MSNRKEIQEYECDLCGYKSKLKPYLRRHMLIHIRPPKVQYYECNLCDQKFKSKSDLKKHDTLTHKELLTQKLPSEIQYYECNLCDQKFKSKTDLKKHDTLTHEELLTQKLPSEIQYYECNLCDQKIKSKTDLKTHDTLTHKDLLTQKLPSEIQYYECNLCDQKFKSKTDLKKHDTLTHEDLLTQKLPSEIQYYECNLCDQKFKSKTDLKKHDTLTHEDLLTQKLPSEIQYYECNLCDQKIKSKSDLKKHDTLTHKELLTQKLPSEIQYYECNLCDQKFKSKTDLKKHDTLTHEDLLTRKIPSEIQYYECNLCDQKFKSKTDLKKHDTLTHEDLLIQKLPSEIQYYECNLCDQKFKSKTDLKKHDTLTHEDLLTQKLPSEIQYYECNLCDQKFKSKTDLKKHDTLTHKDLLTQKLPSEIQYYECNLCDQKIKSKSDLKKHDTLTHKELLTQKLPSEIQYYECNLCDQKFKSKTDLKKHDTLTHEDLLTRKIPSEIQYYECNLCDQKFKSKTDLKKHDTLTHEDLLIQKLPSEIQYYECNLCDQKFKSKTDLKKHNTLTHEDLLTQKLPSEIQYYECNLCDQKIKSKSDLKKHNMLIHKDQLTQKHPSKIKYYECYLCDFRSKWSTGLKKHVLTHKDISEIQCYKCNLCDYKAKWKTSLKNHILIHKDFSEIQNYKCNLCDYKTNRKGSLKAHMFKHIHRSEKKYYECNLCDYKSKQKGNLKNHMSNRKEIQEYECDLCGYKSKLKPYLRRHMLIHIRPPEVQYYECNLCDQKFKSKTDLKKHDTLTHKDLLTQKLPSEIQYYECNLCDQKIKSKSDLKKHNMLIHKDQLTQKHPSKIKYYECYLCDFRSKWITGFKKHVLTHKDLSEIQCYKCNLCDYKAKWKTSLKNHILIHKDFSEIQTYKCNLCDYKTKRKGSLKVHMFKHIHRSEKKYYECNLCDYKSKQKGNLKNHMSNRKDLSKIQGYECDLCGYKSKLKPYLRRHMLIHIRPHEVQYYECNLCDQKFKSKSDLKKHDTLTHKDLLPQKHPSEIQYYECSLCYQKFKSKSDLKKHDTLTHKEQLPHKHPSEIQYYECNLCDQKFNSKTDLKKHDMFTHKDLLTQKLPSEMQFYECNLCDQKFKSKSDLKQHDTFTHKELLPQKHPSEIQYYECNLCDQKFKSKSDLKKHDTLTHKDLLAQKHPSEIQYYECNLCDYNSKRKGGLKKHVLTHKDISEIQCYKCNLCDYKAKWETSLKNHILIHKDFSEIQNYKCNLCDYKSKRKANLKNHMSKHKDSSEIQWHKCDLCGYKSKLKSYLRKHKLTHKHSSRVQYM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-