Phis049332.1
Basic Information
- Insect
- Pogonocherus hispidulus
- Gene Symbol
- clz9
- Assembly
- GCA_963924545.1
- Location
- OZ004701.1:8446208-8447470[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.9e-08 8.3e-06 27.0 0.0 2 39 19 55 18 59 0.92
Sequence Information
- Coding Sequence
- ATGGTAAGGACGTACAATAGGATCCCAGGGTCCCGAAGCTATAGGGACTTCCGGGAAGAAGACATGGAAGGAGCGGTTAATGCTGTTAGAGGAGGGATGTCAAAAAAACTGGCAGCCGTAACTTATCGTGTTCCTCGAACAACACTAGGACGAAGGTTGCTTGGAAGAAATATCAGAGAAGTTGGCCACCCTACGGTTCTTAGTCGCGAGGAAGAGGCTTTAATTGCAGAAACCCTCGGAACGGTTGCACAATGGGGTTTCCCACTGACCAAGCTAGATATTCGGGATGTTGTTaaaaaatttctcgataaacAGGGCAGAGTGGTCCATGCATTCAAAAACAACAGTCCAGAATATGATTTTGTCGAAAGTTTCATCAAAAGACAAAAATTGAGCACAAGAATTGCTTCCAACATAAAACGGTCACGAGCATCGGTCAACCGCGAGGACATTGTGAGTTTCTTTAACAACATAGACACGGCTCTAAGTGACATAAAAGCCAAAAATTTGTACAATTACGACGAAACCAATGTGACAGATGATCCGGGGGCCCGAAAAGTTGTGGTGCCTCGCAACACCAAGCGGGTGGAACGAGTGCAAGAGCATTCTCGTGCTTCGATAAGCATAATGGTATGTGGGAATGCAAATGGCGATTTGTTGCCACCCATGGTGGTATATAAAGCATTAAATCTTTATGACAACTGGACAGAGGGTGGTCCACCTGGAAGCAAATATGCCAACAGTCCAAGCGGATGGTTTGATATGAACCTCTTTGAGACCTGGTTTTTCTCAGTACTGTTGCCCCACATTGAAGCGACCCGAGAGGGTGAAGAAAAAGTGGTGGTAGTTGGCGACAATCTTGCAAGCCACTTTTCCCCGAAAGGCATTAGAGCTTGTAAAGAAAATCATATCTACATGACACCATTTCCCGCTAATGCGACTCACTTAATGCAGCCCCTGGACGTTGCGGTGTTTGCCCCAATGAAACGAAAATGGACGGAAATTTTGAACCAGTGGCGAAAGGAGAGTCGCTACTTGGGCTGTCTGCCAAAAGAACAATTTCCGCAGCTGTTATCAAGGCTCTGGAACGCGGTGAGTGATTCGGTAGGGAAGAATCTACAGTCAGGTTTTGGGGCAACTGGCTTGCACCCAGCAAATGCAGATGAAGTTCTTAAACGCATTCCCGGTGGATTAGAAGCAAATCTTGATGACGCAGGAAGATTGCTTGATGCAAGTTTAATTGAACTGCTCCAAGAACATTGA
- Protein Sequence
- MVRTYNRIPGSRSYRDFREEDMEGAVNAVRGGMSKKLAAVTYRVPRTTLGRRLLGRNIREVGHPTVLSREEEALIAETLGTVAQWGFPLTKLDIRDVVKKFLDKQGRVVHAFKNNSPEYDFVESFIKRQKLSTRIASNIKRSRASVNREDIVSFFNNIDTALSDIKAKNLYNYDETNVTDDPGARKVVVPRNTKRVERVQEHSRASISIMVCGNANGDLLPPMVVYKALNLYDNWTEGGPPGSKYANSPSGWFDMNLFETWFFSVLLPHIEATREGEEKVVVVGDNLASHFSPKGIRACKENHIYMTPFPANATHLMQPLDVAVFAPMKRKWTEILNQWRKESRYLGCLPKEQFPQLLSRLWNAVSDSVGKNLQSGFGATGLHPANADEVLKRIPGGLEANLDDAGRLLDASLIELLQEH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01226706;
- 90% Identity
- iTF_01226723; iTF_01226725;
- 80% Identity
- -