Phis033629.1
Basic Information
- Insect
- Pogonocherus hispidulus
- Gene Symbol
- clz9
- Assembly
- GCA_963924545.1
- Location
- OZ004697.1:24408673-24412409[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.04 6.7 8.1 0.0 17 41 1 25 1 27 0.90 2 2 2.8e-05 0.0047 18.2 0.0 15 35 842 862 832 871 0.84
Sequence Information
- Coding Sequence
- ATGGCAGTTTCAACTGCATGTAAAATGTTTAATGTGCCAAGAACTTCTGTCAGAAATAGATTATCGGGAAAAACATCTGACAACTGTCGTAGAGTGGGACCTGATTCATGTCTTGGAgcagaagttgaaaaaaaattggtaaaatgGTTATTAGATTCTGCATCTAGAGGATTTCCTATAAATCGCGAAGGACTTTTATATTCTGTTCAAAAGCTTGTAgaagaatttaaaattcaaacgCCCTTTGTAAGCAATATTCCAGGAAGAAAGTGGTTTGATGCATTCTTAAAAAGAAATCCCATTGTGAGTCGGAAACACGCAGAGTTTATAAACAAAGCAAGAGCAGCAGTAACAGAAAGAAGCATTAGACAGTGGTTTTTTGAAACAAAGGAACTGCTAGGGCCAGATTTTGACATACTTAGTGATCCAAATAGAATTTTCAATATGGACGAGACTGCCATCTTCTTATCTCCAAAAGGAAATCTTGTTCTTGGTGAAAAAGGCAAAGGCATTTATGATATAACTTCTACGTCTGAAAAAGATAACGTTACAACATTGATTGTTGCCAGTGCTAGTGGACAACTGGCTCCACCacttacaatatttaaatttcaacgaCTTCCAAAACCTTATCTTGCAGCAGCTCCCAAAAACTGGGAAATAGGAATTTCTGAAACAGGATGGATGCAAAGTAAACAATTCTATGAATactttgcaaatatttttgtaaaatttttagcaGATCAAGGTATTCCTCGACCAGTCATTATTTTTATGGATGGGCATGCTTCACATCTATCATTGAATTTGAGCAATTTTTGTCGCTCTAATGGAATTATATTAGTATGTCTTCCTCCTAACACAACTCATATCCTTCAGCCGCTTGATGTAGCTTTCTTCTTCCCTTTAAAAGCAGCATGGAAAAAATTAGCAAAAAAATGGCAGTTAGAGAATGGTGGAAAAACCATTCAAAAGAAGGATGTTCCAGCCGCCTTAAATTCTATCTTGATTCATAAGGACTTTTCTAAATCTATACAATCAGGTTTTAGAGCAAGTGGGTTATACCCCTTTGATGAAAATGCCCCTAATTATGCTAAATGTGTTAGACGTCCAAAACCAAATGATCCGATTGATTCAGAAAGAAAGCAAGAGGTGACAGAAGATGAAGAGCAGCTGAAAGTTCTGGAAAATCATTTACAACCTGATGTTTTGTTGGAGTTTGAAAGGACATTTTCCTCTTTTTATAACTGGAACGGAGAAGAAAAGTTCTTAGAACTGTATAATGTCTGGAAGACAGCAAAAgaaaaaacgataaaaaacaCGTTTTTAGATGTTTCATTGGACGAAATTATTACCCAAGAAAGCGATTTTAACTCAGCAACAGAGAATAATGTCATGATATTTGATTTTCCAGAATTTTACACCAATGAGGAAGTAAGCTTTACTGATCAAACTACtccaaaaataaacatattacaagATTTGGTGATTAAACCCTCaatattaccaaataaaaatgtagacgTATTTTCAGAGGACGATTTGGAACGCACCGAAATAGAAGATAATGAAGAAAATGTACAAGAGGAAAGGGAAGAACAGcccgaaataaaaaatagtgacCAGACAGAAGAAGAGAACAGAAAAGTTAGCCACGAAATAGTAAAGAATGAAGAAACAATGACAGAGAAAGATGAAGAACGTCCTGAAACAGAAAAGAATAAAGTAAAAACAGAAGAGGAAAAAAGGGATCGCCtcgaaacaaaaaataatgagaaaTCAGTAGAAGAGGAAGAAAACGGACTTTCTGAAAGACCAGAAAACAAGAAAACAGTAAcagaaaaaaaagaagaaatatataCCATTGAAAAGAAGAAACAAGACGAAACCTTACCAAATAACGACGTAGAAGAAATCAAAGAAAATTCCAAAGAAGGTGTAAGATTCTTTAAAAAGAGGTCTGTCAGCGAGGTTTTGAAAGACCTTTCCATTTATCCAGAAGAAAACAGTAATTCTCAAACCTCAAAAAGAAAGAGACTTCGTCTACCTTCAGTTATGACGCATGATAAATGGATTGAGCTGATGGAGGCCAAAGAGAAAAAAAACAAGTCTGAAAAAACAAAGACTGGAAAAACAaagactgaaaaaataaaaattgaattagaGGAGAAAAAGACTAAAGCTAAAAGTTATCAAAGTACAGGAGGCCAAAAAGTACAAGgagaaaaacaacaaaaaattgcTGTAACTACTGAACTAACCATAGGAACATTTGTGATTTTAAAATACGATAACGAATTTTATCCTGCAAAAATTGTTCAAATAGAGAACGATGAATTTTATTGTTGTGCAATGACCCAAAGTTGTGGAAACTGGAAGTGGCCCGAAAAGAATGACTTACTGTGGTATAAactaaatgatattttaatgagAATTAATGAGCCAAAGCAAATTAATTCTAGAGGAATATATGCTGTACCTGAATTATTAGATGttcaaaATGTCCTTAGTGCCACTAAAATTGGAATGCCAGTAGCAAAAGCTTCCACAATATTTGGAGTACCTCGTTCCACTTTAAGGCATAAAATCGCAGGGGAAGCTCCAGAAAGTTCTGGAAAAATAGGTCCAGATGCAGTACTAGGGAACGTAAGCTTGCCAACCGTCCCGCATTTGGCGGGACAGCCCCGCATTTAA
- Protein Sequence
- MAVSTACKMFNVPRTSVRNRLSGKTSDNCRRVGPDSCLGAEVEKKLVKWLLDSASRGFPINREGLLYSVQKLVEEFKIQTPFVSNIPGRKWFDAFLKRNPIVSRKHAEFINKARAAVTERSIRQWFFETKELLGPDFDILSDPNRIFNMDETAIFLSPKGNLVLGEKGKGIYDITSTSEKDNVTTLIVASASGQLAPPLTIFKFQRLPKPYLAAAPKNWEIGISETGWMQSKQFYEYFANIFVKFLADQGIPRPVIIFMDGHASHLSLNLSNFCRSNGIILVCLPPNTTHILQPLDVAFFFPLKAAWKKLAKKWQLENGGKTIQKKDVPAALNSILIHKDFSKSIQSGFRASGLYPFDENAPNYAKCVRRPKPNDPIDSERKQEVTEDEEQLKVLENHLQPDVLLEFERTFSSFYNWNGEEKFLELYNVWKTAKEKTIKNTFLDVSLDEIITQESDFNSATENNVMIFDFPEFYTNEEVSFTDQTTPKINILQDLVIKPSILPNKNVDVFSEDDLERTEIEDNEENVQEEREEQPEIKNSDQTEEENRKVSHEIVKNEETMTEKDEERPETEKNKVKTEEEKRDRLETKNNEKSVEEEENGLSERPENKKTVTEKKEEIYTIEKKKQDETLPNNDVEEIKENSKEGVRFFKKRSVSEVLKDLSIYPEENSNSQTSKRKRLRLPSVMTHDKWIELMEAKEKKNKSEKTKTGKTKTEKIKIELEEKKTKAKSYQSTGGQKVQGEKQQKIAVTTELTIGTFVILKYDNEFYPAKIVQIENDEFYCCAMTQSCGNWKWPEKNDLLWYKLNDILMRINEPKQINSRGIYAVPELLDVQNVLSATKIGMPVAKASTIFGVPRSTLRHKIAGEAPESSGKIGPDAVLGNVSLPTVPHLAGQPRI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01226745; iTF_01226746;
- 90% Identity
- iTF_01226745; iTF_01226746;
- 80% Identity
- -