Phis029968.1
Basic Information
- Insect
- Pogonocherus hispidulus
- Gene Symbol
- JRKL
- Assembly
- GCA_963924545.1
- Location
- OZ004697.1:9466313-9468265[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2e-08 3.3e-06 28.3 0.1 3 39 16 52 14 56 0.92
Sequence Information
- Coding Sequence
- ATGGGCAGAAGTGCCCTACGGAAAAAGAGGTCGAAACCAGATGCAGAAAATATGGCAGCAGCTGCCAATGATGTTATCACACACAAACAGTCTCTACGAGATGCAGCAAGAGTTTATGGCTTGTCAAAAAGCACACTTGGCAGgcacataaaaaaatatcaattgtCTGGTCAAactcattttaaatatgaagccAACAATGCGACCCATAAGGTCTTCACCATTGAGCAAGAAGAAGAACTTCTCTCATATATTTTGAGAGCTGCACAGTGGAATTTTGGCGTGACCGTGGACGAAATGAAAAAATTAGCTTTCCAGTATGCGGAAGCAAATAATATCAAGTATCCAGAAAAATGGAAAGAACACGGATCTGCGGGGAGACAGTGGTACCGAACTTTTCGTAATACATATAAGAACAGAATATCTCTTCGCAAACCGGAGTCAACTAGCCTAGGTCGAATGGCTTCTTTCAACAAACCaaatgttgaaatattttttggaaaGCTTCGAGAAGTCTATGAAAGGTATTCTCTGCAACCTCAAAATGTGTGGAACCTTGACGAAACAGGTTGCTCTACGGTCCACAAACCATCGCGTGTTATTGGTGACATAAAAGCCAAGCAAATTGGAGCAGCTACTTCAGGAGAACGTGGTATGAACGTTACAGTTATAGCCACTGTAAATGCTGCAGGAACATTTATTCCTCCAGCCATCATATTTCCTCGTGTTCATTTCAAGGAGCACATGATTAACAATGCACCACCTGGGACAATTGGTATGGCAAATTCTACTGGTTGGTCCAATGCAGAATTGTTTGTAAGATATCTTAAACACTTTATCTCTATAGTGAAGCCTTCTCGTGGCAATGAAGTGTTGTTGATTATGGACAATCACGAAAGCCACCTTTCGTTAGATGCCATAAATTTGGCAAAAGAAAATGGTATCATTTTCTTGACTTTCCCCCCGCATACCAGCCATAAGCTGCAGCCCCTGGACCGCTCTGTCTTTGGTCCTCTCAAAGCTTATTACAACAAAGCCGCCAAGGATTGGATGATCAGCCATCCTGGAAAGCCGTTATCTATTTACGATGTCTCAACCTTATTGGGAAAAGCATTTCCTCTCGCATTTACTCCTAATAACATCACAGCGGGATTCAGGGTTGCTGGCATTTGGCCCTTTAATGCAGAAATATTTGGAGACGATGAGTTCTTACCAGCTGAAATGACAAACAGGCCGTATCATGCAGCACCAGAAACAGCAGCTGGAACCCAATTGTCAAATGCACTTAAGGAGAGGCAAAATAGCGCTGACCAATCAGAAGCGATATCATTGCCAAGTATTGCTTTGGAACAATCCATAAAAGTCACTCCTGAACAACTTCGTCCGTTTCCCAGAGCGCCACCTAGGAAATCCTGTGGTAGAGGTCGAAAACCTGGTAGGTGCATGATTGCCACCGATACACCAGAGAAGCAGAGGATTGAAGAGGAAAAAAGTAAGAAAGACAAATTATGTCCGAAAAAAGAAGCTGCTAAAAGAGCTTTGACAGTGTCATCGTCTTCTTCTGAGGAAGAATTACCTGAGCTTGGCGATAGTTCTGGAGGGAGCAAATTTTGGTCCAGCTCTGAAGATGaggatttttctgatttcttCCCATCTAATGAAGCTCCACTGATATACGATGAAGGCAGTTGGGTCCTTATTAAATACCAAGTCACCGGCAGAGCCGCGGCATACATTTATTACGCTGGGTTAGTGGTAGAAAAAAACAAAGCATATCAAGATGTAACTGTAAAATTCTTAAGGAAGCAGAGCAGCCATTTTGTGTTCCCCAACGTTGACGACATCAGTAGTGTCAGTCCGTGCAATATTGTAAAAGTGTTACCAACACCGGTAATACGTCGTGGGTTTCATGCCTTTAACATTGCATTTCCCCCAGATCTTAACTTAAAATAG
- Protein Sequence
- MGRSALRKKRSKPDAENMAAAANDVITHKQSLRDAARVYGLSKSTLGRHIKKYQLSGQTHFKYEANNATHKVFTIEQEEELLSYILRAAQWNFGVTVDEMKKLAFQYAEANNIKYPEKWKEHGSAGRQWYRTFRNTYKNRISLRKPESTSLGRMASFNKPNVEIFFGKLREVYERYSLQPQNVWNLDETGCSTVHKPSRVIGDIKAKQIGAATSGERGMNVTVIATVNAAGTFIPPAIIFPRVHFKEHMINNAPPGTIGMANSTGWSNAELFVRYLKHFISIVKPSRGNEVLLIMDNHESHLSLDAINLAKENGIIFLTFPPHTSHKLQPLDRSVFGPLKAYYNKAAKDWMISHPGKPLSIYDVSTLLGKAFPLAFTPNNITAGFRVAGIWPFNAEIFGDDEFLPAEMTNRPYHAAPETAAGTQLSNALKERQNSADQSEAISLPSIALEQSIKVTPEQLRPFPRAPPRKSCGRGRKPGRCMIATDTPEKQRIEEEKSKKDKLCPKKEAAKRALTVSSSSSEEELPELGDSSGGSKFWSSSEDEDFSDFFPSNEAPLIYDEGSWVLIKYQVTGRAAAYIYYAGLVVEKNKAYQDVTVKFLRKQSSHFVFPNVDDISSVSPCNIVKVLPTPVIRRGFHAFNIAFPPDLNLK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01226736;
- 90% Identity
- iTF_01226736;
- 80% Identity
- iTF_01226736;