Basic Information

Insect: Pogonocherus hispidulus
Gene Symbol: -
Assembly: GCA_963924545.1
Location: OZ004692.1:52900394-52903558[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 2.2e-08 3.7e-06 28.2 0.1 2 38 58 94 57 97 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	2.2e-08	3.7e-06	28.2	0.1	2	38	58	94	57	97	0.92

Sequence Information

Coding Sequence: ATGATACCCGGCGGTCGATTTCCCCCGCTAAAAATAGGTCCGTCAAGCCTAGTAGATACCTGGAGGACGGTTGCAGAAGCTATGACCGCGACCTCCTGGGCGATGACTGCGAGGGTGCTGAAGAGCatGCCAAAGAATTACATAAAAAAGACCAATCGCTGTGATAttagtgaaaaaaatataaatctggCCATTAAAGCTATATTGACAGGCACTTTAAGTCAGTACAAAGCTGCCCAAGAATACCAGGTTAAAAGACAAACCCTACAGTCTAGAATCAAGAtccttttaaagaaaaaatcaaaagaAGAGCTTCTGGCTAGCTGGGCCGATTCAGGCAATGAAAGTGAAGAGGAGGTTTCTTATTCAAGCAAATATACATCTCGTCAAGTGTTCACTACAAATCAGGAATTAGAGCTTGTAACTTACATAAAGAAATGCTCCAACTTAAACTACGGCCTAAACTATAAGCAGATAAGGAAACTGGCCTACGATTTTGCTAGTGCTTTACCTGATTATAAAGCACCGCACAGTTGGGAGTTGAATAAAATGGcaggtcTTGATTGGCTACGTGGCTTCATGAAACGATATCGCAATGACCTATCGCTCCGAAAACCCGAAAATACGAGTATAAGTCGGTCTATGGCTTTCAATAAACCAGTGATTGAAGACTTTTTCGTTAAGTATGCTTGCGTCCTGGAAAGATATAAGTTCAAGCCAGAACAGATCTGGAATCTGGACGAAACAGGAATAACGACAGTTATGCCACCTGCTAAAGTTGTTGCCCCAAAGGGCAAAAAACAAGTAGCTCATATCTCTTCACAGGAGAGAGGTGAACTTGTGACATTTGTAGGGATGATTAGTGCAGCTGGAGGAGTAGTACCACCGGTCTTTGTGTATCCTAGAGTGAGAAACCCTGAAGAATATTTAGGTGATGAATATCCAATGTCCGCCATTGCCCTTGGGAATAAGAAAGGGTGGATGACATCTGATCTTTTTCCAAAAGTACTTCAACACTTCGCAAGCACTGTTAAATGTTCTGTGGAAAACAAGGTACTTCTTCTCTCAGATAACCACGAGTCACACATATCTGTGGAAGCCATTAAATTGTGCCGAGAAAAAGGGATCATTTTACTTTCTTTTCCACCTCATACGACGCACAGAACTCAGCCTCTAGATGTAGGGGTGTTTGGACCCTTTAAGTCATATCTAGCTACAGCTCAGCATGACTGGTTGCTCTCACATCCAGCAAAAGCCCTTACAATTCGACATTTGGCGCGTTTGGCTAAGCAAGCATATGAATGTGCgttcacaattaaaaatataacaagcTCGTTTAAAAACACTGGTCTGTGGCCGATGAATCGGCTTGTATTCAGTGATGCAGATTTTATGGCAAGCGAAGTAACTGACCAACCATTGACAGAAAATAAAGACGTTAGTTCTATTGGCGCCTCACAGACGGAATTGGAGACTATCAGACCCATCTCACCAATTCCTTCAACATCAAGCCATGCACCAGAAATTATACACAAAACACCTCCAGCCTCTCCTCAAACTTCCACATTGTGTCAAATTAGGCCATATCCAAAGGTGCAATttgaagaaaagaaaaaaaccAAAAAGAGAAAAGCACAATCAACAATATATACAGACACGCCAGAATACGAAAAAAGACAAAGCTTAGAAGCAGAACGGAAAAGAAAACTAACTTTAAAACAGAAGAAGGCATCAGTCAAAAAAGATTTGATCACAGTGGGTAAAAAACGAAATATTTCTACATCAAGCGAGTCGAGTACTGAAGTTGTATTGCAAGATTGCTCGTCAGACGACGACGAAGATTTTGAAGACCTAAGATTCATCTCCGACGGCGAGAATATTGACATAGGAAACTTTGTCCTTGTAAAGTTTCTGGTTTCCAAGAAAGAAATTTTTTATGTgggtcaaataacttctctccAAAATGAGGAATATGAGATCAAATTTCTGCGCCGTAAACCTGATACAAATAGTTTTCTATTTCCCACTGTCGAAGACATTTCAGTAGTACAAAAAAAAGATATTGCAGCTGTTTTGCCTTTTTCTTCCAATCATGGAACTGCAAGAACCTCgagtgtttttaaatttaatgttaacTTTTCGAATCTAAATGTAAGATAG
Protein Sequence: MIPGGRFPPLKIGPSSLVDTWRTVAEAMTATSWAMTARVLKSMPKNYIKKTNRCDISEKNINLAIKAILTGTLSQYKAAQEYQVKRQTLQSRIKILLKKKSKEELLASWADSGNESEEEVSYSSKYTSRQVFTTNQELELVTYIKKCSNLNYGLNYKQIRKLAYDFASALPDYKAPHSWELNKMAGLDWLRGFMKRYRNDLSLRKPENTSISRSMAFNKPVIEDFFVKYACVLERYKFKPEQIWNLDETGITTVMPPAKVVAPKGKKQVAHISSQERGELVTFVGMISAAGGVVPPVFVYPRVRNPEEYLGDEYPMSAIALGNKKGWMTSDLFPKVLQHFASTVKCSVENKVLLLSDNHESHISVEAIKLCREKGIILLSFPPHTTHRTQPLDVGVFGPFKSYLATAQHDWLLSHPAKALTIRHLARLAKQAYECAFTIKNITSSFKNTGLWPMNRLVFSDADFMASEVTDQPLTENKDVSSIGASQTELETIRPISPIPSTSSHAPEIIHKTPPASPQTSTLCQIRPYPKVQFEEKKKTKKRKAQSTIYTDTPEYEKRQSLEAERKRKLTLKQKKASVKKDLITVGKKRNISTSSESSTEVVLQDCSSDDDEDFEDLRFISDGENIDIGNFVLVKFLVSKKEIFYVGQITSLQNEEYEIKFLRRKPDTNSFLFPTVEDISVVQKKDIAAVLPFSSNHGTARTSSVFKFNVNFSNLNVR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01242855;
90% Identity: iTF_01226722;
80% Identity: iTF_01226732;