Phis000040.1
Basic Information
- Insect
- Pogonocherus hispidulus
- Gene Symbol
- -
- Assembly
- GCA_963924545.1
- Location
- CAWUQG010000007.1:43539-43987[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.5e-08 2.5e-06 28.7 0.0 3 41 17 54 16 57 0.90
Sequence Information
- Coding Sequence
- atgccaaaaagaaaaaattgtccTCGCAAAAAAGCAACGTGGGCTGCAGAAGCATTGCAAGCTGCTGTGCAAACAGTTAAAGACGGAAAGGGAAAAAGGCAGAGCGCTAGAGAATTCGGTATACCATATTCCACATTAAAAGACCGCCTTAAAACAGATAACTCTTCTGCAGCTAAACTTAGCAGTCATTCTATATTTTCAACTGAGCAAGAATCACAACTAGAGGAGCGATGTATTCATCTAGCAAAGATGTTCTATGGTCTTACAGCCATGGATTTAAGAAGAATTGCATATGATTATGctcaaaaaacaatattaagcaCTGCTTCAACCATGAGAAGAAAATGGCGGGTAAAGACTGGCTGCAGTTGTTTTTAA
- Protein Sequence
- MPKRKNCPRKKATWAAEALQAAVQTVKDGKGKRQSAREFGIPYSTLKDRLKTDNSSAAKLSSHSIFSTEQESQLEERCIHLAKMFYGLTAMDLRRIAYDYAQKTILSTASTMRRKWRVKTGCSCF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01226728; iTF_01226729; iTF_01226730; iTF_01226747;
- 90% Identity
- iTF_01226729;
- 80% Identity
- iTF_01226728; iTF_01226730; iTF_01226729;