Basic Information

Gene Symbol
clz9
Assembly
GCA_963924545.1
Location
OZ004698.1:52239133-52241343[+]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 1e-08 1.7e-06 29.2 0.1 1 43 8 49 8 50 0.94

Sequence Information

Coding Sequence
ATGGCCCCAAAGAAAAACTATACGCCAGGTCAAATTGCTGAAGCAATAAGGGCAGTTGAAAGAGGGCAATCAGTTGCTTCAGCTGCAAGGGAGTATCATATTCCTCGGATAACTTTACTCTATAAAGTAAAGGGTAAATATCCAAAAGAATGTTCCATGGGCCCGCCGCCAACATTAACTACTGAGGAAGAACAAATCTTGGTACAATGGATTTTAGAGCTTTCTAAAATTCATTATCCTATTTCGAAAATCCAACTATTGGATAGTGTGGAGTTCATAATAAAAGAAACAAGGAGGGAGACGAAGTTCAAAAATGGCAGACCGGGGCTAAAATGGTACAAAGGATTTTTAGGACGACATCCTGAAATCTCCGAAAGAATTAGCCAAAATTTAACTGTTGCAAGGGAAAGTGTTAAGGAACAGCAGATTCGTGATTGGTTTAAAGAGATTAAGAATTACttgatttcaaaaaatattttctatattactGACCATCCAAATAGAGTATTCAATTCTGATGAGACTGCGTTCTTTTTGCAGCCCAAAGGAGAAAAAGTCTTATCAAGAAAAGGTGAAAAGAATGTGTACAGTGCAGGAGGGGATGAGAAGGAGAACATTACCGTACTGGTAACGGCCAATGCTGCTGGCCAAATAGCTCCACCAATGgtgttatttaattatgtaagaATCCCAAGCTATATCTCGTCAAATGTTCCTAAAGACTGGGCAATAGGAACATCAGAAAATGGGTGGATGTGTGGTCCAACATTCTACGAATTTgttaccaatatatttgtacCCTGGCTGGATCAAAAGCAAATACAACGaccagttttattttttgttgacgGTCATGTATCCCATATGACTTTGCATCTTTCAACATTCTGCTCTAAAAATGGAATAGAGTTAATTGCATTATTCCCTAATTCCACCCATCTCTTGCAGCCAATGGATGTTGGAGTATTTAGACCGCTCAAAAATGCTTGGAAAGGTGAGGTAAAAAACTGGAGAATGAATAATTCTGGTAACAAATTGCAAAAACAACACTTTGCACAAGTCCTTAAAAAGGCTTTGGAATATATTTCTGAtgaaacgattgcaaatgcgtTTAGGGCAAGTGGCTTATGCCCGTTTAatgttgaaaatgttaaatttgaaaaaatttcaaaatatcagTCTACAAAAGCACAAAAAAAATCTGCTATCGCAACAGCCATCTTTTTAAGGGCACTTGAGGAAAGAATTggaaaagaaaaactaaatacttttagaaattttgaaaataataaatgggAAGGCCCCATAGAAGATACATCACTTTTCCAGATTTGGAAGGAAGCTTCCATGGAAAATTTAGAGGACAAAGATGACGAAAGAAAAGATTATTTACGGGAAGATGAAATCAATGAAGAAAATAATCATTCCGTAGGTCAAAGTGTAAGTCCAAGTGAAGGCCACATCACCTCAGATGGAAATGAACAACAAATTTTCAAATCGCCTGAGCCTAGTACCTCCAAAAACACTGACAATGAACTTCAAACGCCAGATAAGACTGCGAATGCCTTACCGTTAGATGTGCCGTCGCCTTTTAAGAGGGCTTTATTTTGGCCAGATATAACACCTAaaacaaagaaaagaaaaagtaaagAAAAGATTCCATCAGTTGTCACTTGCGAAGCATGGCAAATCTACCATAAAAAGAAGGAGATGGAAAAAAATAGAAAGATAGAAGATAAACAGAAGAGAGCACTTCTGCGTGAACAAAAGAAATCTGAACAGTtaagaaaaaagaataaaagaaaTGATTCTGAGAGTAGTTCCGAAGAGGAGTGGCAGGAGAGTGGCGATAGCCTAGACGACGTTGAACTTTTTGAAGAATTGCAACCAGATTTTTGCATTGTAGATGCTGTTAAGGATATTCATGTAGGCGactatttattagtaaaattcGTTGGAGGGAAGAGGAAAACTGTAAATTACAGATATGCATGTATAGTTCAAAATGTTTATGAAGATGAAAATGAAGTGGAAATAATGTGCTTGAAAtctttaaataaagaaaaaacacaaTTCAAGATGGACGAAAATGACATTTCGACAATAAACAAAAGTTCCATAGTAGGGAAGTTACCCACTCCAGAAATTGTAACTTCTGGTGAtagaataaaatacaaattttccgAACCAATCGATGTATTTGaagcataa
Protein Sequence
MAPKKNYTPGQIAEAIRAVERGQSVASAAREYHIPRITLLYKVKGKYPKECSMGPPPTLTTEEEQILVQWILELSKIHYPISKIQLLDSVEFIIKETRRETKFKNGRPGLKWYKGFLGRHPEISERISQNLTVARESVKEQQIRDWFKEIKNYLISKNIFYITDHPNRVFNSDETAFFLQPKGEKVLSRKGEKNVYSAGGDEKENITVLVTANAAGQIAPPMVLFNYVRIPSYISSNVPKDWAIGTSENGWMCGPTFYEFVTNIFVPWLDQKQIQRPVLFFVDGHVSHMTLHLSTFCSKNGIELIALFPNSTHLLQPMDVGVFRPLKNAWKGEVKNWRMNNSGNKLQKQHFAQVLKKALEYISDETIANAFRASGLCPFNVENVKFEKISKYQSTKAQKKSAIATAIFLRALEERIGKEKLNTFRNFENNKWEGPIEDTSLFQIWKEASMENLEDKDDERKDYLREDEINEENNHSVGQSVSPSEGHITSDGNEQQIFKSPEPSTSKNTDNELQTPDKTANALPLDVPSPFKRALFWPDITPKTKKRKSKEKIPSVVTCEAWQIYHKKKEMEKNRKIEDKQKRALLREQKKSEQLRKKNKRNDSESSSEEEWQESGDSLDDVELFEELQPDFCIVDAVKDIHVGDYLLVKFVGGKRKTVNYRYACIVQNVYEDENEVEIMCLKSLNKEKTQFKMDENDISTINKSSIVGKLPTPEIVTSGDRIKYKFSEPIDVFEA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01226789;
90% Identity
iTF_01226789;
80% Identity
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