Phis032365.1
Basic Information
- Insect
- Pogonocherus hispidulus
- Gene Symbol
- -
- Assembly
- GCA_963924545.1
- Location
- OZ004697.1:19237383-19239194[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 8.8e-09 1.5e-06 29.4 0.0 1 37 15 52 15 59 0.92
Sequence Information
- Coding Sequence
- ATGGTGGGTAAACGTGAAAGGACATCAACCAGACAATCGTGGGATGAGGAAGCAATGCGAAATGCTATTGAGGCTGTAAAAGGTGGTCGAATGGGATGGTTGAAAGCAGCCAAACTCTTCAATGTCCCTCAGGCCACGTTAAGAGGAAGAGCAAATGATGTAAACAAAAGAGCCAAAGGCtgtgcaaaagttttgggaagATTTTCAACCACATTTAGTGAAGATGAAGAAAGACACTTTGTTGAGCATATATTGTTATTAGAGTCTAGATTGTTTGGGATAACTACTTCAGAAATAAAACAACTTGCATTTGAATTTGCCACTAAAAATGGCATTCCAAATAGGTTTAAAGATCGTAGTGCTGGACGAGAGTGGCTGAGAGGATTTCGTATGCGACATCCTGAAATATCCCTAAGGCAACCTGAAGCTGTGTCTGCTGCTAGAGCTATGGCATTTAATAGGCCacaaatagaaaaattttttaatacgtTGGAGATGACGCTAGAAAAAGAGAAAATTGATGTTAATCGCATTTATAACATGGATGAAAGTGGTCTATCCACAGTGCAGAGACCTccaaaaatttttgtgaaaaccGGAAGAAAACAAGTTGGATCGCTAACCAGCGCCGAAAGAGGCCAGCATGTAACATGTGTCTGCTGCATGAATAGTATAGGTAATTTCGTGCCACCAGCTGTGATCTTCCCTAGGAAAAATAGAAAGGAGGAACTTCTAGATGCTTTACCTCCAGGGTCCTTGGGATTATTTCACGAAACTGGATGGATGACAGCTGATACCTTCGTTTTGTGGTTGGAACATTTCCAGAATTTTGTTAAGGCATCTCTCGAATCAAAAGTTTTATTACTTCTGGATGGGCACACTACCCATAAATCACTGAAAGCATTAACATTTGTCAAAAACAATGGAATAATTATATTGTGCTTCCCTGCGCACTGCACGCATCGTATGCAGCCGCTCGATGTCTGCTTCTATGGTCCCCTGAAGACATTTTATAATCAGGAATGTGCACTCTGGTTGAAAAACCATCCAGGACGAGTAATCACACAGAATCAAATCGGTGAACTGTTCACCTCTGCTTATGGGAAAGCAGCAACAATAAGAAATGCTACAAGCGGATTTTTGAAAACGGGCATTTGCCCATTCAACCCAAATATTTTCCCAGACGAGTTTTTTGAGCCGGCTGAGACCACAGATAGATTACTGGAACCAAGAAATACAGAAGGAGAAACATCTAATCAACAAGAAGAGTCACTCAGCAATGAAATAGAAGAAAGTGGTGTTATGAAGGAAGCGGTGCAACAAGAACAAGATGAAACTGGCAATGAAGAAAATGACGCCAGAGATGATCAGGGTGATAATAATAGGAAACAAAATCcgcctttaaaaaaaataattaccctGCAGGAAATTTCTCCAGTGCCCATAGCAAGTGAAACTAGAAAAAGGAAGATTAGACAAACAATAACCGGAGTTTTAACAACTACTCCTAATATGGAAGAACTCAAGCagaaagaagaaaataaaagacTGGGGAATGTTCGTCAATGCAAAAGGAATATTTTAAGTAAGCCAAGTTCCACTGCACAAACAGAAAGTGAAGAAGAAGATCCGTTTGCAGCCGAGGAAAATGAGGATGAAGTGGCTTGTCTTTACTGCAATGATTTGTTTAGAAATTCGCGGTCCAAGGAGCCTTGGATTAGTTGCATGAAATGCAAGAATTGGGCACATTGTGAATGTGCTGGAGTGTCCCTGAAGATAAAAACTTTCATTTGTGAAATTTGCCAAGATTGA
- Protein Sequence
- MVGKRERTSTRQSWDEEAMRNAIEAVKGGRMGWLKAAKLFNVPQATLRGRANDVNKRAKGCAKVLGRFSTTFSEDEERHFVEHILLLESRLFGITTSEIKQLAFEFATKNGIPNRFKDRSAGREWLRGFRMRHPEISLRQPEAVSAARAMAFNRPQIEKFFNTLEMTLEKEKIDVNRIYNMDESGLSTVQRPPKIFVKTGRKQVGSLTSAERGQHVTCVCCMNSIGNFVPPAVIFPRKNRKEELLDALPPGSLGLFHETGWMTADTFVLWLEHFQNFVKASLESKVLLLLDGHTTHKSLKALTFVKNNGIIILCFPAHCTHRMQPLDVCFYGPLKTFYNQECALWLKNHPGRVITQNQIGELFTSAYGKAATIRNATSGFLKTGICPFNPNIFPDEFFEPAETTDRLLEPRNTEGETSNQQEESLSNEIEESGVMKEAVQQEQDETGNEENDARDDQGDNNRKQNPPLKKIITLQEISPVPIASETRKRKIRQTITGVLTTTPNMEELKQKEENKRLGNVRQCKRNILSKPSSTAQTESEEEDPFAAEENEDEVACLYCNDLFRNSRSKEPWISCMKCKNWAHCECAGVSLKIKTFICEICQD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01187338; iTF_01187342;
- 90% Identity
- iTF_01187338; iTF_01187342;
- 80% Identity
- -