Phis019054.1
Basic Information
- Insect
- Pogonocherus hispidulus
- Gene Symbol
- -
- Assembly
- GCA_963924545.1
- Location
- OZ004694.1:71157445-71157768[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.3e-09 5.7e-07 30.8 0.0 7 38 20 50 19 54 0.93
Sequence Information
- Coding Sequence
- atggTCAGAAACTATCAAAGAAAGACCCAACGACAGAGCTGGGCCATTGAACATAATAATGCTTTGGCTGCTATACGTTCAGGTGTTAAAATACGCGAGGCAGCAAGAAATTTCGGCATTCCCGAATCAACACTGCGCCACCATCTAAAACCTACAGGGTTGGCAGAACCTGGGTCAGAAGTTGACCGCTTGGGGAGGAAACGTCTTTTTACGAAACCACAAGAAGAGTTAGCAAATCAAAGAGTTAGCGACCAAAAGAAAAACAACAACGAAGCAACAATCCGAAATTTGGGCTTCCACAACAATGAAGGCTACTCTCCTTGA
- Protein Sequence
- MVRNYQRKTQRQSWAIEHNNALAAIRSGVKIREAARNFGIPESTLRHHLKPTGLAEPGSEVDRLGRKRLFTKPQEELANQRVSDQKKNNNEATIRNLGFHNNEGYSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01226657; iTF_01226658; iTF_01226659; iTF_01226660; iTF_01226661; iTF_01226662; iTF_01226663; iTF_01226664; iTF_01226760; iTF_01226792; iTF_01226666; iTF_01226667; iTF_01226801; iTF_01226802; iTF_01226803; iTF_01226777; iTF_01226810; iTF_01226651; iTF_01226652; iTF_01226684; iTF_01226653; iTF_01226685; iTF_01226654; iTF_01226686; iTF_01226655; iTF_01226783; iTF_01226656;
- 90% Identity
- iTF_01226657; iTF_01226658; iTF_01226659; iTF_01226660; iTF_01226661; iTF_01226662; iTF_01226663; iTF_01226664; iTF_01226760; iTF_01226792; iTF_01226666; iTF_01226667; iTF_01226801; iTF_01226802; iTF_01226803; iTF_01226777; iTF_01226810; iTF_01226651; iTF_01226652; iTF_01226684; iTF_01226653; iTF_01226685; iTF_01226654; iTF_01226686; iTF_01226655; iTF_01226783; iTF_01226656;
- 80% Identity
- -