Phis042362.2
Basic Information
- Insect
- Pogonocherus hispidulus
- Gene Symbol
- -
- Assembly
- GCA_963924545.1
- Location
- OZ004699.1:31366499-31367302[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.6e-09 4.4e-07 31.1 0.0 1 38 16 53 16 59 0.94
Sequence Information
- Coding Sequence
- ATGGTGTTCAATCATAAGAGAACGACACAAACGGGTCTTGGATGGGACGAAGAAAAAATGTCATCTGCTTTAAGAGcaatagaaaacaaagaaattaGCTTACACCAAGCTAGTAGAACTTTTAACATACTATTTACGACCTTACAACGTCACACTAAATctgtaaaacaaaacaaaaattgggCAGGTTTAGACAAGTATTTTCAGTCCGCAATCGATAAATGGCAAAAGACTCATCCAGGGTTGCATGTTACATTTTATGATATAGGTTCAATCTTTTGCGAAGCATATTTAAAATCAGCTACACCAAACAATGCCATTAAGGGCTTCGAGAAAACAGGCATTTCTAGCTGCAACATTGATGTGTTTGATGAAGCTGACTTTTTACCCTCCATGGTGACCGATAATTCCATTAATGAAGAACATAATCCAAAACCTGATAGTCATCAAGAAATGGTCTCACATCTTACCGAAATGCGATCGCCGTTCTTCGCAATGCAAAAGGAAAAGTCAGAAATCAGGGAAATTCTAACATCAACTGCTGTGAAGGAAGAAATTAAAACTTCcactaaaaataaagttaatttgaaGGCACAAAACACAGTCAAAGAGCCTGGTAGAGGGTATCTCTACCAGCCAGACCTTTGGCTACCAGAGGGTAGCCAAAGAGAGGGTATCTAG
- Protein Sequence
- MVFNHKRTTQTGLGWDEEKMSSALRAIENKEISLHQASRTFNILFTTLQRHTKSVKQNKNWAGLDKYFQSAIDKWQKTHPGLHVTFYDIGSIFCEAYLKSATPNNAIKGFEKTGISSCNIDVFDEADFLPSMVTDNSINEEHNPKPDSHQEMVSHLTEMRSPFFAMQKEKSEIREILTSTAVKEEIKTSTKNKVNLKAQNTVKEPGRGYLYQPDLWLPEGSQREGI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01226573; iTF_01226574; iTF_01226575; iTF_01226611; iTF_01226590; iTF_01226771;
- 90% Identity
- -
- 80% Identity
- -