Phis000690.1
Basic Information
- Insect
- Pogonocherus hispidulus
- Gene Symbol
- -
- Assembly
- GCA_963924545.1
- Location
- OZ004692.1:11941334-11943259[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 7.9e-10 1.3e-07 32.8 0.0 4 41 17 55 14 57 0.92
Sequence Information
- Coding Sequence
- ATGCGTACGTATAAGAGAAAATCTTCGAGACAAGAATGGGATGCAGCAAGTATGCGCAGAGCAATAGAAACGGTGTATAAAAGAGAAATGGGCTTCAAAAAAGCTGCTTTAACATATAACGTGCCGAAGTCAACATTAGAAGACAGAGTTAAGAAACTACGCAATGGGTGTACGCTAGATGAAGCAAGTTCTAAAGGTAtgggaaattttaaaacaactttTTCAACTACCCAAGAAGAAGAACTggtgaaatatataaaactcaTGGAAAGTCGATTATTTGGACTAACTACCAAAGATTTGCGGCAATTAGCATTTCAATTAGCAGAAAGAAACcaaataaatcataattttaaacaCGGCATTGCAGGTATTGATTGGTTGAAAGGGTTCCTAAAACGGCATAAGGATCTGTCTTTAAGAAGTCCCGAGGCAACGTCGGCTGCTCGTGCAATgggatttaataaaatagcagtctcaaaatttttcgaaaattttactCATTGTTtagacaaatataaaattcaaccACATCGAATATTTAACGTCGATGAAACCGGAATAACATCGGTGCCAAAGACACAGTCAAAAATTATAGCTCAAAGAGGCCGGCGGCAAGTAGGAACATTAACATCTGCCGAGAGGGGGCAAACGGTAACAGTAGAATTATGTGTTTCTGCATCTGGAATTTATGTGCCACCACTTTTTGTATTGCCAAGGGTGAGGATGAAACCAGAACTTCTTGACGGTGCACCAATAGGAACTATTGCAGTGTGCCACCCGTCTGGTTGGATGCAAGCGGATATTTTTCTGCAGTGGATAAAACACTTTTCCAAGCATGTTAAACCGTCAGTGGACGATCCGGTATTATTGCTCCTTGATGGCCATGCAACGCATACGAAGAACTTAGCAGTGATTGACTATGCCCGTGCTAATGGCATCGTAATGCTCTGTTTTCCGCCGCACTGCACACATCGGCTTCAACCGCTGGATGTTAGTTTTATGGGACCGTTGAGCACCTTCTATAGTCAAGAGGTAAAGACATGGTTACGTAATAATCCAGGCAGGGTTGTAACGCAGTTTCAGATTGCCAAACTATTTGGAGCAGCGTTCGCAAAGGCTGCTACGGTCCAGAATGCACTGGGAGGATTTAGGAAATGTGGAATTTTTCCAACTGATCCAAACATTTTTGGGGAAGCCGATTTCGCCCCAGCTGAGACAACTGAAAGGCAAGAAGAAGGAGGGCTGCGAAACGAAATAGAAGAAACAGATTATGCAAACTCAACACACACAGAGGTATTGATTATAGCAGATGAAAATAATACTACAGCATTTCGATTTGAAGATGGAAATGAGAATGTAGAATTGCAACCTCAAATATCTATCAGTCCGCAACCAGGACCTTCAAGGTTGCCATCATGCTTTTCTGTAACACCAGAAATCCTTGCTCCTGTCCCGCATGTGTCAAGGCCTATTGGAAAAACAACCAAGAAGAGAGGAAAAACTGTTATCCTCACAGAATCTCCATATAAGAATGAACTTATGGAGACATTGCAAACTCCATCGCGAAAAAAAATGAAAGCTTcgacaaaaagaaaaatatttgatgGAAATATGAAAACTACAAAAGGAAGAAGGAAGAACGAAGATGAGGAAGAAGACACAAATTTAAGATCGGAAAGTGAAAATGAAAGTGGGCAGGAAGATGATGCCTTATGTTTATATTGTGAAGAAACTTATTCGGCAACAAAAAGAAATGATGGCTGGGTACAATGTTTAACTTGTAGAAAATGGGCACATGAGGGATGCACCCATTTGTCTGAGGAAGACCTTGATCAATTTGTGTGTGATAAGTGCcgccatatttaa
- Protein Sequence
- MRTYKRKSSRQEWDAASMRRAIETVYKREMGFKKAALTYNVPKSTLEDRVKKLRNGCTLDEASSKGMGNFKTTFSTTQEEELVKYIKLMESRLFGLTTKDLRQLAFQLAERNQINHNFKHGIAGIDWLKGFLKRHKDLSLRSPEATSAARAMGFNKIAVSKFFENFTHCLDKYKIQPHRIFNVDETGITSVPKTQSKIIAQRGRRQVGTLTSAERGQTVTVELCVSASGIYVPPLFVLPRVRMKPELLDGAPIGTIAVCHPSGWMQADIFLQWIKHFSKHVKPSVDDPVLLLLDGHATHTKNLAVIDYARANGIVMLCFPPHCTHRLQPLDVSFMGPLSTFYSQEVKTWLRNNPGRVVTQFQIAKLFGAAFAKAATVQNALGGFRKCGIFPTDPNIFGEADFAPAETTERQEEGGLRNEIEETDYANSTHTEVLIIADENNTTAFRFEDGNENVELQPQISISPQPGPSRLPSCFSVTPEILAPVPHVSRPIGKTTKKRGKTVILTESPYKNELMETLQTPSRKKMKASTKRKIFDGNMKTTKGRRKNEDEEEDTNLRSESENESGQEDDALCLYCEETYSATKRNDGWVQCLTCRKWAHEGCTHLSEEDLDQFVCDKCRHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01226635;
- 90% Identity
- iTF_01226635;
- 80% Identity
- -