Basic Information

Insect: Pogonocherus hispidulus
Gene Symbol: -
Assembly: GCA_963924545.1
Location: OZ004697.1:2167438-2173058[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 1.9e-10 3.2e-08 34.7 0.0 2 39 272 308 271 311 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	1.9e-10	3.2e-08	34.7	0.0	2	39	272	308	271	311	0.95

Sequence Information

Coding Sequence: atggaaaacaaaaaattttgcaGACTCTGCATTAATGTTATAGAGGATACAAATTTCAAAGTTATAGATGAATATGTAAGAGAAGTAATAACATTCGTTCTGAAATTGGATCTGGAAGAAGAGAGTGAATGCGTGATATGTCTTGACTGTTCTACAAAACTATTTACAGCATTTGATTTTAAATCGTCTTGCCTTTACACAGAGGACAATCTATCCCCTTACTTTAGCTCAGAAGAAACGTCTTTTGTTGATTTAACTGGTATATTCGATGCTCAGGTCTGTAGGTTATGCACACAGATAGGAAGTGAATTCATACCATTGCATGAAGTGAAGTATGATATAATACAGAAGTGTGTTCCAGAATTGAATTTTAGTCTCACCAAGAATCCTGTGATCTGCAAGATATGTTTTGACTTCCTTGGCAGCCTTAGCGTTTTTATCGCACACTGTCTGGACATTCAAGATAACGTCAAAAACACAAACAATCAATCTCCTCAACCATCCTTTGAGCCGTATATCAAAACTGAAGATATCAAAACGGAAACTGAAGAAAATGAATTGGTAGGAAAAgaatatgtaaatgaaactgAAAATATCGATAGCGTTTTTGAAGAAACTAAAGTAGAGTGCATTGAAACGTTAATCAAGTCTGAAGTTAATGActtaaattttgagttaaattCTGAGGAATATGAACGGGAGGAGAAGGAAGCGATGACTGGAATTGAGGACACTGGAATAAAATTTGAGGAATCCAAGGACGTTGGCTATGCTTGTACGCCGGAAGCCAAGCAAGAAAGAGCCTTGTGGGAAGACGACACTTTAAGAGAAGCCATGGAGGCCCTCAACAGCGGGATGTCACAACACAAAGTGTCGAAGCTGTTCGGAGTACCTAGAAGCACGTTACGCTACCACGTGAGGACCGGTAGCGTGGATCGACGATTGGGAAGGAAAACCAAACTGTCACCTGCCTTGGAAGAGGAACTTGTGCGTCACCTCATCCGTTTCAGCGAAATAGGCGTTCCTCTTACCCCCAAAATGGCGCATCACCAATTTGCTGTCATTAGCGGGTCGCCGTCTCTGCTAAACGAAAGTCAGGAGTCTGTCGGCAGGACTTGGTTTCGGCTCTTTATGAAAAGGCATCCCAAGTTGGCGAAGTATAGGGTGCAGCCTACTCACGATGGGGAACCACCACCATTGCAGAAGAGTACCATGGGCGATTATTTCCGCAAGCTAAACAAAACCCTCGACAACTTGAACATAAAGAATGAGCCACACCGGATTTTCAGTATGGACGAAAAAGGATGTCCATTAACGCTACATTCGCAAGTGACTGCCCTCGGAACAAAATACGGAAAAAGTGTTAAACCTCCGGCTCAAAGTTACCGGAAAGATGTTACCATTGTGAGTTGTGTGAACGCGGCAGGTGGCTCTGTACCTCCCATGATCATCTTTAAAGGGAAACACGTGGAACGGGAATCGGCGTACAATCTGCCGTCAGGGAGCGTCGTGAAGTTTTCGAGAGGGGGATTCATGACGACAGagttatttattactttcataGAACATTTGGCGAAGTACAAGGCCTCGGGATCCGTACTTTTGATGTTCAATGGTGAACGGCATCACCTGGACTACAGAATTATAGGCGCGGCGGAACTCCACGACATAACTCTGTTCTGCTATCCTTGTAACGGTACACGCGAACTGCATCCTCTGGATAGTGAAGTGTATCCAGCATTCGAGCGCTGCTGGAACCTGGAAGTGTTGAGGTCTTGGGACGGCATCGTCGACCTCCCTATAACGAAATTCGGGTTTTGTATAATCTTCTCGAAGGTGTGGCCGGCGTGCGTTACTCCCGGTAAAATTCAAAGGGGCTTCCGTGCGACAGGTATTTATCCCTTCGCCCCACGAGCGGTCACGGGGGAAGCATTTGAAGTAAATATCGTGGTGCGCAAACGTAGACGTACTTCCGAGAAGAGTGAAGCGCTGCCAATCGATAAGTAG
Protein Sequence: MENKKFCRLCINVIEDTNFKVIDEYVREVITFVLKLDLEEESECVICLDCSTKLFTAFDFKSSCLYTEDNLSPYFSSEETSFVDLTGIFDAQVCRLCTQIGSEFIPLHEVKYDIIQKCVPELNFSLTKNPVICKICFDFLGSLSVFIAHCLDIQDNVKNTNNQSPQPSFEPYIKTEDIKTETEENELVGKEYVNETENIDSVFEETKVECIETLIKSEVNDLNFELNSEEYEREEKEAMTGIEDTGIKFEESKDVGYACTPEAKQERALWEDDTLREAMEALNSGMSQHKVSKLFGVPRSTLRYHVRTGSVDRRLGRKTKLSPALEEELVRHLIRFSEIGVPLTPKMAHHQFAVISGSPSLLNESQESVGRTWFRLFMKRHPKLAKYRVQPTHDGEPPPLQKSTMGDYFRKLNKTLDNLNIKNEPHRIFSMDEKGCPLTLHSQVTALGTKYGKSVKPPAQSYRKDVTIVSCVNAAGGSVPPMIIFKGKHVERESAYNLPSGSVVKFSRGGFMTTELFITFIEHLAKYKASGSVLLMFNGERHHLDYRIIGAAELHDITLFCYPCNGTRELHPLDSEVYPAFERCWNLEVLRSWDGIVDLPITKFGFCIIFSKVWPACVTPGKIQRGFRATGIYPFAPRAVTGEAFEVNIVVRKRRRTSEKSEALPIDK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -