Phis032305.1
Basic Information
- Insect
- Pogonocherus hispidulus
- Gene Symbol
- -
- Assembly
- GCA_963924545.1
- Location
- OZ004697.1:18936545-18936988[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9.1e-13 1.6e-10 42.2 0.0 3 39 17 54 16 57 0.89 2 2 9.8 1.7e+03 0.4 0.0 30 38 130 139 129 143 0.91
Sequence Information
- Coding Sequence
- ATGGTCAGAACTTATAAGAGACTAACCAATCGAGGTAATATACCGAAGGAGCGTTTCGAAGAGGCTAACGATTCAGTGCAAAATGAGAAGCTTTCCTTAAGAGATGCCGCTAACCGGTATGGGATTAATTTCACGACCCTTTACCGGTATGTTAAAAAACGTAAGTCAAATCCGGATAATGTTCAACTAACTGTAAGCTATGCAAAACCGTCCATGGTTTTTACCGAAGCTCAAGAACTAGAGTTAGCAAAGTATGTGGAAGATtgctcaaaaatatattatggaaTAACTACAAAGGACTTAAGAAAATTTGCATtcgcaaatgaaaataaatttcctgaaccctggaaaaaatatgaaatggcGTCCAAAGACTGGTTAAAAGGATACTCTACTTTaagaataaattacaaaaaaaattgttttaacttACAACACACTTAG
- Protein Sequence
- MVRTYKRLTNRGNIPKERFEEANDSVQNEKLSLRDAANRYGINFTTLYRYVKKRKSNPDNVQLTVSYAKPSMVFTEAQELELAKYVEDCSKIYYGITTKDLRKFAFANENKFPEPWKKYEMASKDWLKGYSTLRINYKKNCFNLQHT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00768056;
- 90% Identity
- -
- 80% Identity
- -