Pcup020322.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Poecilus cupreus
Gene Symbol
nfxl1
Assembly
GCA_963942605.1
Location
OZ012718.1:12440793-12444223[+]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 3 5.6e+04 -5.0 1.9 15 19 169 173 169 173 0.85
2 18 0.22 4.1e+03 -0.5 0.8 4 10 204 210 203 210 0.95
3 18 4.6e-08 0.00085 20.9 16.4 1 19 218 235 218 235 0.99
4 18 2.3e-09 4.2e-05 25.0 16.4 1 19 271 289 271 289 0.98
5 18 2 3.8e+04 -3.6 1.8 6 10 314 318 313 318 0.89
6 18 1.7e-08 0.00031 22.3 11.1 1 18 324 341 324 342 0.98
7 18 2.9e-06 0.054 15.1 12.0 1 18 377 394 377 395 0.97
8 18 1.6 2.9e+04 -3.2 0.2 1 4 404 407 404 408 0.88
9 18 0.00022 4 9.1 17.1 1 18 429 446 429 447 0.92
10 18 1.4e-09 2.6e-05 25.7 13.1 1 19 456 474 456 474 0.97
11 18 0.0024 45 5.8 5.3 9 19 522 532 520 532 0.90
12 18 0.03 5.5e+02 2.3 12.1 1 12 541 551 541 551 0.95
13 18 3 5.6e+04 -4.8 4.6 16 19 576 579 574 582 0.55
14 18 1.1 2.1e+04 -2.8 0.9 9 12 607 610 605 613 0.60
15 18 5.5e-05 1 11.0 7.6 1 11 618 628 618 629 0.99
16 18 3 5.6e+04 -6.0 4.3 6 10 646 650 643 650 0.81
17 18 3.5e-05 0.65 11.6 15.0 3 19 659 675 658 675 0.94
18 18 1.1e-06 0.021 16.4 12.0 1 16 719 733 719 739 0.93

Sequence Information

Coding Sequence
atgagTTCTTCTGGCCATGGTAAAAGGCCAGCAAATGCCTGGAACAGGAATCCCGCAGGCAGAGGAAGAGAAACTCTTAATTCAAGCCAAAAAACAAATCCCACCCAGACAGAAGCAAAATTTAAAGAAGCTCAGCTTAAACTACAAGCTGCTGTTGAAAAATATGCTAAAGATTATGAATCTTCTTCATCTGAAGATGAATTGGAATCAGAGCAAGTCATTGaatcaATTTTGAAGAACTATTCTCAAGTTGGTGGTAAAACAGACTCAATAGGACGCACACAAGCATTTCTCGAAGATGCCTTATCGTCGGGTGCAGCCACATGTTTAATTTGTATTGGATCAATTAAGAGAGTGGAAAAGATATGGAGTTGCGTAACTTGTTATTGCTTCTTCCATCTCCAATGCATCGAACGATGGTCAAAAGATAACGTTGTTCAGCAAAAAGAATCATTAAGAGAAGAACCACATAATCATACGACCACAGTTAATATTCGTTGGGGTTGCCCAAAATGTAGGTTTGAGTATCGCCAAGAAGACATTCCTAgagaatataaatgtttttgtgaaaaaactataaatccaccgtttcatcCTTGGCTGGTTCCTCATTCTTGTGGAGAAACATGCGGCAAGAAATTGAAACCATTATGTGGCCACGAATGCATTCTTCTTTGTCATCCAGGCCCTTGCCCACCATGTCCAAAAACTGTGACTGTTCCTTGTTACTGTGGAGCAAAACCAGCAAAACTACAACGTTGTTCCAACAAAGAATGGTCATGTGGTTCGccttgtaaaaaaaaattaggctGCGGTAAACATACGTGCACTAAGTCGTGTCATTCAGGACAATGCCCACCATGTTcaaaaacaagtaaacaaaaatgtaattgtGGAGCCCAAGAACAATTAACGGAATGCGCTACTCCCAACTGGCAATGCAAGAAGGTATGTGGACGTAAACTATCTTGTGGTACTCACTGGTGCGAAGAAATATGCCACGCGGGGCCCTGTGGAAACTGCGCCTTAACTTTACCACGCTCGTGCCCATGCGGGAAGAGCAATTATAAGTTACCATGTACTGAAGAAACTCCAACGTGTGGCGATACGTGCGGCAAAGTGCTTGAATGTGGCGCACATACTTGCAACCAAAGATGCCACAAGGACAAATGTGGAACTtgTTTGGAAATGGCCGTAAAAATTTGTAGATGCGGATTACATGAAAAGGAAGTCCAGTGCAAGAAACAATTTCTTTGTGAGactaaatgtaaacaaatgaaAGACTGCCAAAGACATCCGTGCAATAGAAAGTGTTGTGATGGATCCTGTCCACCATGCGAAAAACCTTGTGGCCGAACCCTCCCGTGCGGACTACACAAATGCCCATCAGTGTGCCACCGCGGTCCATGCTATCCATGCACTTTGACCTCAACTGTCCGTTGTTATTGTGGAGGAACTACCATCACCGTCCCATGTGGTCGTCGTAAACGTACGCGCCCTCCACGATGTCTTCGCCTCTGCAAACGTCCTCCAATCTGTCACCATCCAACAAGCAAGCCCCACAAATGTCACTTTGGCGATTGTCCTATCTGTTCGCAGATCTGTGACAAGGAACTCAAATGTGGACATAATTGTCAGCACACATGTCACACTAGTGTTTTGGTGAAAGTGGGACAAAAAGCATCCATGCCTTGGGAACAGGGTGAAATTATGGAGAAGAAATGTTTGCCCTGTCCGGATTGTAAAATTCCTGTTCCGGTGACTTGTTTAGGAGGACATGAGACTTCTAATTGGCCGTGTCATACTGCGAAGCCGAGATCTTGTCACAAACCATGTGGCCGACAACTCAGCTGCGGTAATCATAGTTGTCAACAAGAATGTCATATCGTTGAGAATGCTAGTGATGATACATCgGCTGGAATCAACTGCGAACAATGTGAAAACCCTTGTACATTTCCGAGACCAGTGGGTTGTCAGCATGATTGCCCGCGCCCTTGCCACTCAGGACTTTGCTCTCCGTGCAAGAACATGCTGCGTTTAAAATGCCACTGCGGTTTAAACCAACAATACGTTCGCTGCGCCGACTGGATTGCTAAAGATGCGAACAAAGAAATTCTCCAAAGTTGTGGAAGTCAATGCCCTAAAAACTATGAGTGCGGACATAGATGCAAATCTAACTGTCATCCAGGTCCATGTCCTAATGCAGATTTATGTAAGAAGAAAGTCAAAGTATTTTGTTCTtgtagaagaattaaaaaagaatTCTCCTGTGAATTGGTCCGTAATAATTCAGCTGAAGTCCACTGTGATGAAATTTGCGCAAAAGACAAGGAAGAAAGAAAGAAGGTTCAAGAGAAAGAAATGGAAGCAAAGAAAAAGGAGGAAGAGGCGAGAAATGCTAAAGAACTTGAagaatttcaaaagaaatttcAAGGGAAAAAGAAGTACAAGGACAAGAAAAGGAATTATGAAGTGGAAGAAAAATCCTTTCTTCAGAAATACTGGATGTTTATTTTGGCCCTCATTGTAGTGTTGATGACAGCATACATAGTAtggtaa
Protein Sequence
MSSSGHGKRPANAWNRNPAGRGRETLNSSQKTNPTQTEAKFKEAQLKLQAAVEKYAKDYESSSSEDELESEQVIESILKNYSQVGGKTDSIGRTQAFLEDALSSGAATCLICIGSIKRVEKIWSCVTCYCFFHLQCIERWSKDNVVQQKESLREEPHNHTTTVNIRWGCPKCRFEYRQEDIPREYKCFCEKTINPPFHPWLVPHSCGETCGKKLKPLCGHECILLCHPGPCPPCPKTVTVPCYCGAKPAKLQRCSNKEWSCGSPCKKKLGCGKHTCTKSCHSGQCPPCSKTSKQKCNCGAQEQLTECATPNWQCKKVCGRKLSCGTHWCEEICHAGPCGNCALTLPRSCPCGKSNYKLPCTEETPTCGDTCGKVLECGAHTCNQRCHKDKCGTCLEMAVKICRCGLHEKEVQCKKQFLCETKCKQMKDCQRHPCNRKCCDGSCPPCEKPCGRTLPCGLHKCPSVCHRGPCYPCTLTSTVRCYCGGTTITVPCGRRKRTRPPRCLRLCKRPPICHHPTSKPHKCHFGDCPICSQICDKELKCGHNCQHTCHTSVLVKVGQKASMPWEQGEIMEKKCLPCPDCKIPVPVTCLGGHETSNWPCHTAKPRSCHKPCGRQLSCGNHSCQQECHIVENASDDTSAGINCEQCENPCTFPRPVGCQHDCPRPCHSGLCSPCKNMLRLKCHCGLNQQYVRCADWIAKDANKEILQSCGSQCPKNYECGHRCKSNCHPGPCPNADLCKKKVKVFCSCRRIKKEFSCELVRNNSAEVHCDEICAKDKEERKKVQEKEMEAKKKEEEARNAKELEEFQKKFQGKKKYKDKKRNYEVEEKSFLQKYWMFILALIVVLMTAYIVW

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00029877;
90% Identity
-
80% Identity
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