Pcup012685.1
Basic Information
- Insect
- Poecilus cupreus
- Gene Symbol
- -
- Assembly
- GCA_963942605.1
- Location
- OZ012715.1:18261059-18264802[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.013 2.5 10.3 4.6 2 23 238 260 238 260 0.91 2 10 8.1e-05 0.015 17.2 0.3 3 23 322 343 320 343 0.93 3 10 7.8 1.5e+03 1.5 7.6 3 23 456 477 455 477 0.95 4 10 0.083 16 7.8 0.1 2 23 538 560 538 560 0.93 5 10 6.8e-05 0.013 17.5 3.4 2 23 621 643 620 643 0.96 6 10 0.01 2 10.6 3.6 2 23 772 794 771 794 0.96 7 10 0.1 19 7.5 4.2 2 23 808 830 807 830 0.92 8 10 0.00062 0.12 14.5 0.4 2 23 906 928 906 928 0.93 9 10 1.7 3.3e+02 3.6 1.7 1 23 1002 1024 1002 1024 0.97 10 10 0.00042 0.08 15.0 1.7 2 23 1054 1076 1053 1076 0.93
Sequence Information
- Coding Sequence
- ATGATGACCTCGGCACCCACCCCGGCCCCGGCGTGCACCACTGCCGGCTACCCGTCGCCGTCGCCGTCGCCGTCACCTGCGGACGACGACAGCGCGAGCGCATCCTTACGTCTTGCCACCGCCACCGCCACCACCACCGCCACCGCCAAACGTCCCGCCGGTCCGGTTCAAACCGACCCTTGCAAGAAGCGCCGCAAGCAAGCCACACCCATCCGCATCTCTACCACCGGCACCGGCACCGCCATGGCCACCACCGCCGCCACCGTCACCACTACCATCACCACTGTCACCACTGCTGACGTCAGCCTCGATATCGGCCTCGGCCTGTGCTACGAAGGTAAGCTTTCCACATTTCCCTCGTTGCACTCCCCTGAACCTGAGCCTGATCCTGAACCTGAACCTGAACCTGAACATGAGCCTGAGTCCGAGCCCGATCGCACCAATCGGTTAGAATCCGGTGTCACGGTCCCAATCAAGGTGGAACACATTGACCCTGTCAGTCCCTCGTTGCCTGTGAACCTGTCTGGCGGCCAGAACTTCCCGCCGTGGCTGTCCGACGTTCAAGTCCAGGCCAAGACCAGTGACTGGCACTCGTCCCACTCGTCGCACTCTTCACAGTCCATCGCTAACCATAACTTCTATGTGCCTGTCCCCGTTAGTCGCGCTGTTACCACATCACAACCGCCCATTCGGATATTCAATCCCGAGGCTTACTGTGAACTATGTAATAAAGAGTTTTGTAATAAGTACTTCTTGAAAACACACAAGGCAAACAAACATAGAATATACACAGATCCAGCCACTTCCGATGCAGTCACAGTGAGTCTGCCAGTCAATGTTCCTTCGTACACTGCGTCTGTATCTGCTGTGTCCATTATGAAGAAGCCCATGTCCATGTCCATGTCCATGTCGATGTCTGATGGATCGCCAGTGAAGGCACATACGGATTTCATGAGCATTTTCTGCGATTTATGCGGCAAGGGTTTCTCGAACAAGGCGATGTTGAAGACGCATCGGGTGAGTGTACATGGGGCCGTGGACCAGGACGTGAACACAGAAGCTGAGGCGTTAGCTCTGGGGATGGCCATGGCTGTGGACGTCGTGCACAAAGAAGAGCGTGACCCGGATCTCGGCGAAATGAGTGGTGCGTCTGCAACTGCGACTGCGTGTACCATTTCCTCTGCTACACTGCCAGACAAGGACAACATGCTTTATAAAGAAGATGCAACGGTCAACCTGCTGCCCGCAATGGATCAAGATGAAAATTCCGAAAATACAGTCGTACAACAACGAGATCGAGATCGAGATCTTGATTTCTCTACTAACCGTACCAGACGTCTTGGCATCATGAATCCAGAAGCATTCTGTGAAATTTGTTGTAAAGAAtactgcaataaatattttttgcggACGCATAAAATGAAACGTCACGGGATATTAATTCCAGATGAAAATTCCAAAGATAATCAGAaagattttaaattagaattatcAATTAGTAATAACTGGTATCAAATACAGACCAGTCCATTGAATTTAATTATGGGTGAACAGAACACGAACAGTTCCGGTTCGTGTAGCGAGAGGAAGTCATCGCCGGCGAATGAAAACGAATGCGAAATATGTGGAATGCGTTTTCAAACGTTATATCTCGCACAACTACATTTTGCAACAGCCCATTCACAATCACAAACCAAACCATCCAACAGAAACAGTGATGAGTTAGTTGCGAACAACAACGATAAACAGGCGTCTGACTCCATCAGCGAAGATTTGCAGAAATTACAGACAATGATCCTGCAACTGAACGACTTGGACGTCAGCAAAGTTGCTGTAGGCACTAGTGGGTCTGCACTGTGCACGTGCAGCATGTGTGGCAAAGAATTCGAGAACCGATATTACTTGCACGCCCATTTGATGACTGAACATGGTGTGCTATTGGAGAACAACTCGAACTCGCACTTAACGGACAAGCAATTCGAACAACAGTTGGATAATGGGACTGGAACTGGGAGTGAAATGACTTTGGCATTGGCACCGACACCAGAAGTACAAAGTGTTGACAATCAACTTCAGTCAAAATTTCCTAATTCTAGTACAACCTCTGTGTCAGCTCTAACCATATCTGCAAGCGTTCTGGACAAGAAGGATGATTCCAACGGTTTCATGAGTACAGAGAAGGTGAGTCGAAGCGGAAGCAACAGTAACACGAATACTAATActaatacaaatacaaatacgaACACGAACGGTACTGGAAGCGCCGTGGGCTCCGAGAGACGTTCATCGGTCACAATGACACCTGCCAATAGTTACTGCGAGATTTGCAACAAAGAACTGTGCAACAAGTACTTCATGAAAACCCACATGCAACGAATGCATGGTATCGAGATTGAGAACGGCGCGCAGATTGGTGGCGTTGTgtgcaatatatgcaataaaGAGTTGTGTAGCAAGTACTTCCTACGCGTGCATAAACACAACACGCACGGTATTGTGCAGGACAATATTGGCGTCGGTACCACTCCAGGTGTTGGCACTACTTGCACCGGTACGAATGTGAATCAGACGCGTCCATCGAACATGGACATGGAAGCACAAGGTGTGAGCGTCGGTCCAGGGCCAGTAGTCGCGGCTACAGACGTAACAGACTCTACTCTCAAACTAGGAGACTTGTCTGACTTGAGTAATCGTTACTTTACCCATTTTACGGAAGTGTGCACAATATGCAGTCGTCGATTCCGCAGCACAAAGTGGTTAAAAGCGCATTTACTTGGTGACCACGGAAAAGCTGGAACGGACAAATGGAACGAGTTGGAGTTACATTTACAACAGTCTTTTGGACAACAAACGCAACAACAACGTAAAAGTGCTAGTGTAGGAGATCGCTCGAGTCCAACTCTACGAATACCAAATGGTGGCCAAGATAATACAAAATCAGAAGGCGGCATGCAAAACGTGTTATCTAGTATATTTGGAACGGATGAAAGTAACGTGAAACAATATCATTGCTCGTTCTGCTCTTTCTCAACACCAGTTCTGGCTTTTCTGTTTGTACACGAACGATCGCACTCACATACGCGCGGCGTAGGCATTGCCGAAGTGAACAACACATGCAGCAGTGGTGCAACAGCAACTCCTAGCGCAATATCTCCACTGTATTGTGCCGTGTGCAACCAATCGTTCCGACAGCCCGAACAATTACATCATCACATTGTGTCGCAACACACGTTCCTATCTCTGTCCTCGTTCTTTGGAAATGTAAGACAACCTCAGCTTCAGCCGCAGCCGCAACCATCATTGGTGGAATCGGTGGAACATATGGACCATCAGCAAACACAACATCAACAACTTTTCGAAAAGTGTTCCAAGTGCGGAAGCGGGAAGAAGCAGCTGGAGGTGAGCGCGGACATAAGCGTAGCACTGAAAGACGTGTCGAAGCAGCGACAACTACCAGCCACATATGCGCTACCGCAGCCACACAAGGCCAAGTACACGATGCAGGCGTTCCTGATGGACGAGCCAACAACAGCGGATGATGAGAATGCACACCACGTAGATGTACTCAGTGCAGGAGGCACGGGAACGCTCACTTTTACGAGTACCAATGGAGACGAGGAACAAGATGCAGCAACGGCAACAACTACAACGGATCGGAGATTCGCACCATCCATTGTCTTCCTACCCGTCCTGGAGAAATTAACCGCTCCTCTCACTGTGTCGTTCACGCTCACTCCTGCCTAG
- Protein Sequence
- MMTSAPTPAPACTTAGYPSPSPSPSPADDDSASASLRLATATATTTATAKRPAGPVQTDPCKKRRKQATPIRISTTGTGTAMATTAATVTTTITTVTTADVSLDIGLGLCYEGKLSTFPSLHSPEPEPDPEPEPEPEHEPESEPDRTNRLESGVTVPIKVEHIDPVSPSLPVNLSGGQNFPPWLSDVQVQAKTSDWHSSHSSHSSQSIANHNFYVPVPVSRAVTTSQPPIRIFNPEAYCELCNKEFCNKYFLKTHKANKHRIYTDPATSDAVTVSLPVNVPSYTASVSAVSIMKKPMSMSMSMSMSDGSPVKAHTDFMSIFCDLCGKGFSNKAMLKTHRVSVHGAVDQDVNTEAEALALGMAMAVDVVHKEERDPDLGEMSGASATATACTISSATLPDKDNMLYKEDATVNLLPAMDQDENSENTVVQQRDRDRDLDFSTNRTRRLGIMNPEAFCEICCKEYCNKYFLRTHKMKRHGILIPDENSKDNQKDFKLELSISNNWYQIQTSPLNLIMGEQNTNSSGSCSERKSSPANENECEICGMRFQTLYLAQLHFATAHSQSQTKPSNRNSDELVANNNDKQASDSISEDLQKLQTMILQLNDLDVSKVAVGTSGSALCTCSMCGKEFENRYYLHAHLMTEHGVLLENNSNSHLTDKQFEQQLDNGTGTGSEMTLALAPTPEVQSVDNQLQSKFPNSSTTSVSALTISASVLDKKDDSNGFMSTEKVSRSGSNSNTNTNTNTNTNTNTNGTGSAVGSERRSSVTMTPANSYCEICNKELCNKYFMKTHMQRMHGIEIENGAQIGGVVCNICNKELCSKYFLRVHKHNTHGIVQDNIGVGTTPGVGTTCTGTNVNQTRPSNMDMEAQGVSVGPGPVVAATDVTDSTLKLGDLSDLSNRYFTHFTEVCTICSRRFRSTKWLKAHLLGDHGKAGTDKWNELELHLQQSFGQQTQQQRKSASVGDRSSPTLRIPNGGQDNTKSEGGMQNVLSSIFGTDESNVKQYHCSFCSFSTPVLAFLFVHERSHSHTRGVGIAEVNNTCSSGATATPSAISPLYCAVCNQSFRQPEQLHHHIVSQHTFLSLSSFFGNVRQPQLQPQPQPSLVESVEHMDHQQTQHQQLFEKCSKCGSGKKQLEVSADISVALKDVSKQRQLPATYALPQPHKAKYTMQAFLMDEPTTADDENAHHVDVLSAGGTGTLTFTSTNGDEEQDAATATTTTDRRFAPSIVFLPVLEKLTAPLTVSFTLTPA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -