Pcup044316.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Poecilus cupreus
Gene Symbol
insm1
Assembly
GCA_963942605.1
Location
OZ012727.1:14574003-14576870[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.36 69 5.7 0.2 1 23 189 212 189 212 0.94
2 16 0.015 2.8 10.1 1.7 1 21 222 242 222 243 0.94
3 16 0.49 94 5.3 1.7 2 23 252 273 251 273 0.89
4 16 0.11 20 7.4 0.7 2 23 281 303 280 303 0.91
5 16 8.1e-06 0.0015 20.4 0.3 1 23 309 331 309 331 0.98
6 16 0.0087 1.7 10.8 3.2 1 23 337 359 337 359 0.94
7 16 7.4e-06 0.0014 20.5 2.7 1 23 365 387 365 387 0.99
8 16 0.22 42 6.4 0.4 1 14 397 410 397 420 0.87
9 16 0.0036 0.69 12.0 2.2 1 23 436 458 436 458 0.98
10 16 8.8 1.7e+03 1.4 6.4 1 23 464 486 464 486 0.87
11 16 0.053 10 8.4 3.5 1 23 504 527 504 527 0.93
12 16 0.00028 0.053 15.6 1.0 1 23 534 557 534 557 0.98
13 16 0.18 34 6.7 5.9 1 23 562 585 562 585 0.90
14 16 2.1e-05 0.0039 19.1 1.0 2 23 593 614 593 614 0.98
15 16 0.00047 0.089 14.8 0.4 1 23 620 642 620 642 0.95
16 16 4.5e-06 0.00085 21.2 2.2 1 23 668 690 668 690 0.98

Sequence Information

Coding Sequence
ATGCATGaatataatgaagaaattatgaCAGATTTGTGCAGGCtttgtgcaaaaaatatttcagaagacATTAAAGTTCAAATATTTGATGAAAACCACGAAAACGTTAAACTAgaagagaaaataaataattctttaccAATTAAAATCAAGAAAGAAGATGGTCTACCGCAACAAATTTGTAGTTCTTGTACAGACAGactaaaaaattgttatgaatTTGTGCAAATTGTTGTAGAAGCCGACAAACAGTTACGCATAAAATTTCCgaacgtattaaatgaaaattttaaaaacacttCAGTTTCTGAATTCATGTCGGAATTTCTGGGTTCATCTCCCGTAAATAAATCGAGTGAAGATCAACCAAAAAACGTAAAATTTGAACCAGAAGAGTCACTAGATATGATCGATAATGAATTTGAAACCGAGTATCTTGATACAGAAGAATCTGAAAACAAAATCGACAAAGAAAAACCAAATTGCCGCTTATGTGATTTAATAATAGATAATTTAGAAGAAGCAGTAAATCATGGCATTACTGTTCATCATATAAATGATCTCTTTGCTTGTGTATTTTGTGAATTGGGTTTTCAAAAATCAGCTTCTTTAGATCAACACGTTAAAAATGAACATCGCAATTTATTTACAGAATCGCGGAAGTACAAATGTACAGTTTGTTCAAAAAAATATGGTTCCCAATTGTTATTACTGAAGCATACTTGTGTGAAATCTGCTGCAAATAAAACACTCCACTGTGAAGTTTGCAATCAGGCGTTTCCTACAAAAGTGAGATTAAATTTTCACagacaatttcatttaaaagatgcTCGCCCTTTACATTGCGCAGTTTGTAACATGACATTTGAggatgaaaatgaatttttcgaCCACGTTAATTTTATGCACGATTCAAAACAAAGTTTCCCGTGTGATATTTGTGACAAAACTTTCAGCATCCGCGCAGCGTTGAACAACCATAAGAAAATGCATACAGGTATTCGTAATCACAAGTGTGAGAAGTGCAACAAAACGTTTTTGGACAAACAAACTTTAAAAGAACATGAAGTTAGCCACATGGAAACCAAACCATATCAATGCCATATCtgtggtaaaaatttaaataggttAAGTCGTCTCCGCCGCCATCTTTTAACGCACGAGTCGAACCCTGTTAGCAGTGATATCTTTGTTTGCGATATCTGCAAAGAAGCTTTTTCCGATGAAGCCAGCGCAGAATTTCACAAAACTTACAAACATGACAACAAAAAGGGCTGCATTAGAATTTTAAATACCGATAAAGTATTTCGCTGCGAATTTTgcgaaaattgttattatacaCCTATAGCTCTAAATAAACATAGAAATATTCATACTGGCCCTACTCCATACACATGTCATATTTGTAAAGCACAATTTAGTTCATATCCAAGATGCACCACACATAAAACAACTCATGGATTGTACAAAGATGGTGCTGAAAAAGATAACTTTCCAGTTGTTAAACATTTCCTGTGCGAACATTGCGGAAAATCCTATCTTCACTGGACTTATCTCGGTCTCCATCGCCGGTTAAAACATTCAGATAATGTCCAGGTGTACAAATGCACGGACTGCAAGTTACAGTTTCCGAATAGCTGGGGCCTTGCGTATCACCGAAAAACCAAGCACTTCCAGGAAACGCACAAATGCAAAGAATGCGGAAAAGTTCTTGCCAACGAACAATGTTTGAAGTTGCattgtttaacaaaacattCAGCTTCACAGAAAGATAATCGATGTGGAATATGTGGGAAATTCTTCCAGTACCAAACTTCCCTAGAATCGCACTTGAAAACTCATAAAGGACTAAAAGAGTACAAATGCGCGTTATGCCCAAAAAGTTTTATCCATCTTGCAGCATTGTCCAATCACTTCATTGAACACAAGACAAGAAAATTCGTTTTTCCCAACGAAAGCGAAACATCCAAcagacaaaaattaataaacaacgaTCGTCCGTTCACTTGTGAAACTTGCGGATTGTCTTTTCGTCGTCAATTCACTTTACGGAATCATTTacttaaacatacaaaacttaCGGATACTGGAAGTTTTGTCTTAATGGTGGACATGAAGGAAGATGAAAATCTTGAAGAAAATAAAGTAGTTCCGCAACCTGTGCAAATTCCAGAACAGGTAACTAAACCACCAGAACCGGAAATGAATTTAATTCAGCTCGCACCTGGACAAGAACTGGCGCAGAATTATATCGATATGGGCAACGGGAATTATTTGCCGGTGCAAGGAACTACTTTTAATATCGGAGGAAAAGAATACATTCTTATTGATGAAAATGGTAAAGCTGTTTCAAGAAATCAAGAGTTTGAAATGATTGTGGATGAAACACTGAGAGGCGAAGAACATGTGAACCAGGCAAATTTAAATCCAGAACAACAACTTGATAACAATACTGTTATGTATGTTGAGTCTGATAATAACTCGTATGTATTAAATCAGAACGAAATGCAGTCCGATTACGTATTTACTTCCGATAATAAAACTTTGACTAAGACTGTTACGGCCGCAGGAACTACTTACGTCATCGGCGGAAATGAATTCTTACTTCAAACTGAAGATCAAACGTTTTAA
Protein Sequence
MHEYNEEIMTDLCRLCAKNISEDIKVQIFDENHENVKLEEKINNSLPIKIKKEDGLPQQICSSCTDRLKNCYEFVQIVVEADKQLRIKFPNVLNENFKNTSVSEFMSEFLGSSPVNKSSEDQPKNVKFEPEESLDMIDNEFETEYLDTEESENKIDKEKPNCRLCDLIIDNLEEAVNHGITVHHINDLFACVFCELGFQKSASLDQHVKNEHRNLFTESRKYKCTVCSKKYGSQLLLLKHTCVKSAANKTLHCEVCNQAFPTKVRLNFHRQFHLKDARPLHCAVCNMTFEDENEFFDHVNFMHDSKQSFPCDICDKTFSIRAALNNHKKMHTGIRNHKCEKCNKTFLDKQTLKEHEVSHMETKPYQCHICGKNLNRLSRLRRHLLTHESNPVSSDIFVCDICKEAFSDEASAEFHKTYKHDNKKGCIRILNTDKVFRCEFCENCYYTPIALNKHRNIHTGPTPYTCHICKAQFSSYPRCTTHKTTHGLYKDGAEKDNFPVVKHFLCEHCGKSYLHWTYLGLHRRLKHSDNVQVYKCTDCKLQFPNSWGLAYHRKTKHFQETHKCKECGKVLANEQCLKLHCLTKHSASQKDNRCGICGKFFQYQTSLESHLKTHKGLKEYKCALCPKSFIHLAALSNHFIEHKTRKFVFPNESETSNRQKLINNDRPFTCETCGLSFRRQFTLRNHLLKHTKLTDTGSFVLMVDMKEDENLEENKVVPQPVQIPEQVTKPPEPEMNLIQLAPGQELAQNYIDMGNGNYLPVQGTTFNIGGKEYILIDENGKAVSRNQEFEMIVDETLRGEEHVNQANLNPEQQLDNNTVMYVESDNNSYVLNQNEMQSDYVFTSDNKTLTKTVTAAGTTYVIGGNEFLLQTEDQTF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-