Basic Information

Insect: Poecilus cupreus
Gene Symbol: wdn_1
Assembly: GCA_963942605.1
Location: OZ012721.1:10583792-10591655[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00013 0.024 16.6 1.3 2 21 178 197 177 198 0.95

2 10 1.4 2.7e+02 3.9 6.3 1 19 206 224 206 228 0.89

3 10 0.00082 0.16 14.1 1.5 1 23 234 257 234 257 0.94

4 10 2.1e-06 0.0004 22.2 0.1 1 23 263 285 263 285 0.98

5 10 2.2e-05 0.0042 19.0 0.1 1 23 293 315 293 315 0.98

6 10 2.8e-06 0.00053 21.9 2.5 1 23 321 343 321 343 0.97

7 10 2.1e-05 0.004 19.1 5.5 1 23 349 371 349 371 0.95

8 10 0.00038 0.073 15.1 3.1 1 23 377 399 377 399 0.98

9 10 0.00046 0.087 14.9 1.2 1 23 405 427 405 427 0.98

10 10 2.6e-05 0.005 18.8 3.6 1 23 433 456 433 456 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00013	0.024	16.6	1.3	2	21	178	197	177	198	0.95
2	10	1.4	2.7e+02	3.9	6.3	1	19	206	224	206	228	0.89
3	10	0.00082	0.16	14.1	1.5	1	23	234	257	234	257	0.94
4	10	2.1e-06	0.0004	22.2	0.1	1	23	263	285	263	285	0.98
5	10	2.2e-05	0.0042	19.0	0.1	1	23	293	315	293	315	0.98
6	10	2.8e-06	0.00053	21.9	2.5	1	23	321	343	321	343	0.97
7	10	2.1e-05	0.004	19.1	5.5	1	23	349	371	349	371	0.95
8	10	0.00038	0.073	15.1	3.1	1	23	377	399	377	399	0.98
9	10	0.00046	0.087	14.9	1.2	1	23	405	427	405	427	0.98
10	10	2.6e-05	0.005	18.8	3.6	1	23	433	456	433	456	0.98

Sequence Information

Coding Sequence: ATGCGTCATTTGGAATTACCACCCTCTCAGAGAGACTTTGACGATGATGAAGTGAAAAGTGAATGTagtattgaaataaaagatgAAGATTTGGAGGCTCTGGACATCAAGGAAGATTTTATGGATGAATTACCTTTGGATGTTTCTTTAGAATCAGACACTGTTTTATCATCTGACATAAGAAGAACTGCTTTTTCTGATGATGATAGCTCAGAAGATGTTGAAGTACTGCCAAGCATTGGAAGCAATTCTAATAGAAACTTTATAAGTAAATCATCCGCAAATAAAAGTATTAAGGCAAGAAGTCGAAGAAAAAATGCGCAACCACAGCGTGCTGTACAATCAGAATCTTCCAATTCTGCGTCGAACAATGACAATTCTGTTGATTATGACGAGCCGGAAGAAGGAGAGGATGATAGCCGAGATATTGAGTCAGACATTTTTAGGGGATTAAAAGAAGAAACAGgGGAAGAATTTGATGAAGAAATGCAACGAAGTGTAAAAGAAGAATGGAAGGCACATTGGGGTGTGAAATGTAACATGTGTGAAaaagtttttacttttaaatctcAATTTGACAAACATTACCGAAATAGTTATAACAGCAAGCCTCAGTATACTTGTTCTTATTGTGACAAAACTATGGACAAATACTCGACTTTTAGATCGCACTGTTACAGGCACATCACAGAAGGTAGATATAGATGTTATAAATGCAACAAGGGATTCAGTTTAGAGAGCATGTTACATGATCATATTATTGCAAAACACACCGAAGTCAAACCATTTATTTGTGAAGAATGTGGCAAAGGATTTGTAACTAAGCCTGGACTAAAGATACATTTGAAAAAGCATAAAAATGGCGAAAAAGAAGATTACCCGTGCGCTGAATGTGGGAAAGTTCTCCATACCCGCGGCGGACTAACAGCCCATATGAACGTCCACCGCTTGGGTCGTCGGTTCATGTGCGACGTATGCGGTAAAACCTTCACGCAGAAAGTCAACATGCAACAACACGTGAAGCACCACAACGGGGAGCGGCCATTCTCGTGCGACAAGTGCGGAAAGTGCTTCGCGGAGAAATCACACCTTGCACGCCACTACAGCTTCCACAGCGAGAAGCGGCCGTACAAGTGTGACGTGTGTCAGAAGATGTACAAGACGGAGAGGTGCCTCAAGGTGCATTCGATGGTGCATGCGACCAGCAGACCCTATGTGTGCAGTTATTGTAGTAAGGGGTTCTTGAGCAGCACGAAGTTGAAGCAACACCTAAACATCCACACAGGCCAGCGCCCTTTCAAATGCAAATACTGCGAACGAACCTTCACCAACTACCCCAATTGGTTGAAACACACGCGACGGCGACACAAAGTGGATCATAAGACTGGACTAGACTTGGTGCCCAAGCAAGAGGCGTTAACGCCCGCGCCGCATGTTGAACCGGATCCCGCAGACCCCACCGATTCTACGGAGGCCGTTCCAGCGGTCCCAACGGCTGCTGAGATCAACAACTTTATGATTGATTACGCTTTGAGAACGGACAGTGAGATGAATCTGCAGTATGCGGATGATAGGTTGATAATACCGCAGCATATGGACTTTACAAATGTGAACGGCGCGCACCCGGTAGGCCTAGTGGTCCCATGCTACCAGGAACAGTTGCCCGACCACTACATCACACACACGAACCTTATGGATGTTTCGCAGCAGCTGCAGCTGCAACAAACGTTCCCCGAACAACTGCTGCATCCGCAGCTAATACCACAGCACATGCTGCAGATGTGA
Protein Sequence: MRHLELPPSQRDFDDDEVKSECSIEIKDEDLEALDIKEDFMDELPLDVSLESDTVLSSDIRRTAFSDDDSSEDVEVLPSIGSNSNRNFISKSSANKSIKARSRRKNAQPQRAVQSESSNSASNNDNSVDYDEPEEGEDDSRDIESDIFRGLKEETGEEFDEEMQRSVKEEWKAHWGVKCNMCEKVFTFKSQFDKHYRNSYNSKPQYTCSYCDKTMDKYSTFRSHCYRHITEGRYRCYKCNKGFSLESMLHDHIIAKHTEVKPFICEECGKGFVTKPGLKIHLKKHKNGEKEDYPCAECGKVLHTRGGLTAHMNVHRLGRRFMCDVCGKTFTQKVNMQQHVKHHNGERPFSCDKCGKCFAEKSHLARHYSFHSEKRPYKCDVCQKMYKTERCLKVHSMVHATSRPYVCSYCSKGFLSSTKLKQHLNIHTGQRPFKCKYCERTFTNYPNWLKHTRRRHKVDHKTGLDLVPKQEALTPAPHVEPDPADPTDSTEAVPAVPTAAEINNFMIDYALRTDSEMNLQYADDRLIIPQHMDFTNVNGAHPVGLVVPCYQEQLPDHYITHTNLMDVSQQLQLQQTFPEQLLHPQLIPQHMLQM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01275637;
90% Identity: iTF_01275637;
80% Identity: -