Pcup010190.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Poecilus cupreus
Gene Symbol
-
Assembly
GCA_963942605.1
Location
OZ012714.1:29180813-29183231[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 0.0031 0.59 12.3 1.1 2 21 147 166 146 167 0.92
2 14 0.028 5.3 9.3 1.2 1 21 176 196 176 197 0.93
3 14 0.0011 0.22 13.6 0.6 2 23 202 224 201 224 0.94
4 14 3e-06 0.00058 21.7 1.8 1 23 230 252 230 252 0.99
5 14 5.5e-06 0.001 20.9 1.2 2 23 395 416 395 416 0.97
6 14 0.0065 1.2 11.2 0.5 1 21 426 446 426 447 0.88
7 14 0.00027 0.052 15.6 3.0 1 20 487 506 487 509 0.93
8 14 0.058 11 8.3 0.2 1 23 514 537 514 537 0.94
9 14 2.8e-06 0.00053 21.8 0.4 1 23 543 565 543 565 0.98
10 14 5.8e-06 0.0011 20.8 2.4 1 23 573 595 573 595 0.99
11 14 0.0067 1.3 11.2 0.5 3 23 603 623 601 623 0.97
12 14 0.00064 0.12 14.4 0.2 1 23 629 652 629 652 0.97
13 14 0.00059 0.11 14.5 0.4 1 23 664 686 664 686 0.97
14 14 0.052 10 8.4 1.7 2 23 765 786 764 786 0.96

Sequence Information

Coding Sequence
ATGGATGCTGTCATTCCAAATCAAGGAAACAGTATTTCAGAAATAATTTGTGTTTCTGATAATACTCATCAGGAAGCTTACACTGAAATGATTAATCATGCATCTTATTCTACATTATTAAAACATGGCCCAGTTTACTCAAGTGGAAAACAAGATGCGGTACTCTCTACTGATTACCAGTCTATGAAACTTAGCAATgaatttgataaatgtcatcCACAGgagaaaatgaattattatgtCAATGGTAATGATGATTTCAACCATATTATAGATAAAGTAAACCAGGATTCTGTGAACGATAATGAAATTGGAACGGAACCTGGACACCTTTCGCTTAAGACCACAGATGACGAAAGtATGGCAGTAGAGGCTTTAAGGCAACTTGGTGGCATGTATCCAAATGTAGTTAATACTGAACAAGCACTTTCAATGTTGTCATGCAGTATTTGCAACACGAAATTTCATACTACATCAGATCTTCGGATACATACAACAACATGTAGGACGCAGTTCTTCCAAAATTACACATGTTCGGTGTGTAGTGAGGTTTTCAATGATGAACAGAAATACAATGACCACAAATGTATTATGACCAAACTACCTTGCAAGTATTGCTACACATATTTTACTACCAAAATTGAGTTAGACAAACATATTAAAGCTAACCATAACTCTCGTCGTCCATATAAATGTCACTTCTGCAACATGGCATTTCCTAGATCATCTAGTTTagcaaatcatttaaaaattcacaattatttaccAGGCAGAGCGCTAATTACTAGTGATAGTAAAGAAATAGGACCTGGTCCAACAAACATATCTACTACTTGGAACTTCGAAAGTGTATATATGTCGGAAAATACTGCAATTAATTCAACTACAGATCCTCTATCCAATTGGAATTTGAATTATGCGACTAATCCTCTAGTGCAACTAGAAACAACTGATAAATTAGATACAACTGCACAAGCTATTGTGAAAAATGATTTTGCTCCACAGTcagttaatgaaaatattagtgATAAAAAAACAGATGACATTGATTTTCAAATTCCAATTAAAATAGAAGTAGTACCATATGTTTcagatattgaaaaatgtttagatcAATCTTTTCCGATAACAAGTATGCCACAAATGGAAATTACAATTGGATCAGACGATAAAAAACCGAATGTTTGTTCACACTGTGGAATGAGTTTTAGCAGGGAGAAGGCATTAATTTCTCATATGAAATTACATTCAATTGGTTTGTTTTCGTCATTGGCGCATGAATGTGAAAAGTGTGGGGAAACATTCTCAGATCAAATCATATTATTTCAGCATAAAAAATCATGTATAGTTTTGAATCAAacatttgaagaaaatataaatgtgcAAATAGAAAATCAAAAGATAGAACCTGCTAAACATACTGTATATCCCACGAAACCACAAGTAAAGGTGGGTAAACATCCTTGTCCTGATTGCGACAAGCATTTCACaactaaacaaaaaatgttcagacaTTTATGGATTCATCGTAAAAAGACATTTACTTGTGAATTATGCGCTATGACATTTGAAGCTCAAACAGAATTAGACAAACATCGATTAGCTCAACATCCAGCTGATAGCCCTTATGTTTGTAacgaatgtggaaaatgttttGCAAGTAGACAGGGACTTTGGGAACACGGCAGAGTTCATGGAGGAGGCTCTGCTGGTTTATTTACTTGTAACAAATGCAATAAAACATTTGCTAGTCGTCAAGGTTTCTTAATTCATCAAAGAACTCACACAGATGAAAGACCTTATGGATGtaggttttgcttaaaagcttTTAGAGATGGCGGAACGCTTAGAAAGCATGAAAGAATACATACGGGTTATAGACCATATGTTTGTCCAATATGTTCTCATGATTTTAACCAAAAAGTTGTATTGCGGGAACATGTTCGGTGGGTACACGTTgctaataaaattgaaaatgataATGGATTTTTCgaatgtcaaatttgtaataatagtgTAAGTGATAGAGAGGAACTATGTGCGCATATTGTAAAACATAGTGATTTGTTAAGTTTagaagcaaaaaataatttaaaagactctaaccaaaataatacaaaagtaaataatagagttaaaaagaaaattgtacAACCGAAATCCAATAATGCAATTAAAGTTGATAGCATGCTACcagaaaaaattgttaaacccaAGGCAGAACAATTGGATTTAAGTTCTGGGGATTATAATTTGAGTAATTATGATTTTACTCAGGATCAGAATAACGTTGAATGTGATTTATGTGGAATTAAGTTTTTATCACATAAAGATCTAAAAACGCACGtccatatacatatttaa
Protein Sequence
MDAVIPNQGNSISEIICVSDNTHQEAYTEMINHASYSTLLKHGPVYSSGKQDAVLSTDYQSMKLSNEFDKCHPQEKMNYYVNGNDDFNHIIDKVNQDSVNDNEIGTEPGHLSLKTTDDESMAVEALRQLGGMYPNVVNTEQALSMLSCSICNTKFHTTSDLRIHTTTCRTQFFQNYTCSVCSEVFNDEQKYNDHKCIMTKLPCKYCYTYFTTKIELDKHIKANHNSRRPYKCHFCNMAFPRSSSLANHLKIHNYLPGRALITSDSKEIGPGPTNISTTWNFESVYMSENTAINSTTDPLSNWNLNYATNPLVQLETTDKLDTTAQAIVKNDFAPQSVNENISDKKTDDIDFQIPIKIEVVPYVSDIEKCLDQSFPITSMPQMEITIGSDDKKPNVCSHCGMSFSREKALISHMKLHSIGLFSSLAHECEKCGETFSDQIILFQHKKSCIVLNQTFEENINVQIENQKIEPAKHTVYPTKPQVKVGKHPCPDCDKHFTTKQKMFRHLWIHRKKTFTCELCAMTFEAQTELDKHRLAQHPADSPYVCNECGKCFASRQGLWEHGRVHGGGSAGLFTCNKCNKTFASRQGFLIHQRTHTDERPYGCRFCLKAFRDGGTLRKHERIHTGYRPYVCPICSHDFNQKVVLREHVRWVHVANKIENDNGFFECQICNNSVSDREELCAHIVKHSDLLSLEAKNNLKDSNQNNTKVNNRVKKKIVQPKSNNAIKVDSMLPEKIVKPKAEQLDLSSGDYNLSNYDFTQDQNNVECDLCGIKFLSHKDLKTHVHIHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-