Pcup040228.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Poecilus cupreus
Gene Symbol
-
Assembly
GCA_963942605.1
Location
OZ012725.1:16450624-16453444[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 3.5 6.6e+02 2.7 1.9 2 23 316 338 315 339 0.93
2 16 0.014 2.7 10.2 1.0 1 23 379 402 379 402 0.93
3 16 0.18 34 6.7 4.8 1 23 439 461 439 462 0.96
4 16 0.02 3.8 9.7 1.2 2 23 486 507 485 507 0.97
5 16 5.7e-05 0.011 17.7 2.3 1 23 510 532 510 532 0.98
6 16 0.011 2.1 10.5 0.2 1 23 538 560 538 560 0.91
7 16 0.00078 0.15 14.1 0.6 2 23 568 589 567 589 0.97
8 16 2.9e-06 0.00055 21.8 2.3 3 23 594 614 593 614 0.98
9 16 0.00014 0.026 16.5 3.0 1 23 620 642 620 642 0.98
10 16 7.4e-07 0.00014 23.7 0.5 1 23 648 670 648 670 0.98
11 16 2.2e-05 0.0042 19.0 3.0 1 23 676 698 676 698 0.97
12 16 0.00022 0.042 15.9 1.5 1 23 705 727 705 727 0.99
13 16 4.8e-05 0.0092 17.9 2.5 1 23 735 757 735 757 0.97
14 16 0.00015 0.028 16.4 1.6 1 23 763 785 763 785 0.97
15 16 3.3e-05 0.0064 18.4 3.4 1 23 791 813 791 813 0.98
16 16 1.9e-06 0.00035 22.4 0.2 1 23 819 841 819 841 0.98

Sequence Information

Coding Sequence
ATGTCTTGTTTACTGAATAGACCATCTAAAAAaccaagaaataaaatattaatatgtgcAGCTAAAAACTGCAACAATAATTCAAAAGAAACACcgttattaaaattctttacattTCCAAATAAAGAAGCTAgtgcACGAATCTGGGCTACAAATGCAGGACGAGACGACATCCTATCAAAATCTTTTTCtgttatcaaaaattatttattatgtgcaGACCATTTCGACGAAAAATACTTGAATGAAACGAAAACTATCTTTAAAGATAATGTTGATCCAATCCCAACTATATTTGACAAGAATTTCAAATGGAGAGAGACAAGATTATTTGCTATGGATGATATAAGAGCTGAGAATTCTCGTACAGACAATTATATATCTAATGACATTACTATTATCCAAAATTATACTGAGTTTGATGTTGAATTTGGACGATTCACTTACACAGATGATTTGTACGAAGAATTTGTTGCTAATCCCGAAGTTCTCAGTTTGAGGACAAATTATTATGATCAGCTTTTAGTCCGGGACTATTGCAGATTATGTGCAAAACAGTTACCGGTAGCTAATATGGTCCCACTATTTGGCAGCCAAGGTTCTAGCTATGGAGAAATGTTGGAACTGTGTTTGCCAGGAAAGgTCAAAGAAAGTGATAAATATCCACATGTGATCTGTTCTTCATGTATAAAGAGACTGGAggattgttataaaatattaaaatcgtttatTGAAGCGGAccacattattaaaaaattagttaataaagTTGAAGCTACAACACGCCTtaatgatgaaataaataatccGAATTCTGAACAGCCTGTGGAAGATATattaAATTCCATTGATGACAAATCATTAATTACAATAACTACAGATTTAACAAGTGATCAACAAGAACCAATCGAAACtgttaaacaaaaagaaaagaaaattaaattgcaaTGTGTagtatgtttaaaattattttgtaacgaAAAAGAAATATCAGAACATTATCTTGTATCTCATCATACTCAGAAAAAAGTTTTTAGACTAGTAAAGGTAGAATTGAGAAAAACAGTTAACAATGATGTAAAAATTCGAAAtcaaaatgaagaaataaatgaCAAGTTAACAGAAGAGATAAAATATCAGTGTTTAAAGTGccgtaaaatatacaaaacgaaGAAGAAAGTGATTGAACATACTCTAGCGGTTCATCCATTTAcaggtaaaaataaaagtgaGATTTCTTACAAATtagttaaagttaaaaaaaaatcagaaattaaaaaagaaacacGCGAAACCAAATATTCGTCTATAAGATACGAATGCTTATTATGCAGCacacattataaaaataaagatattttaattaaacatacaCAACGTCATCATCCAAATCTTAAGAATGGAAAATTATTATGTCGAATTCTTAAGCCCAAACAATACCGAAACCATAATGTTACATGTTTAAGATGCAGCGAATCATTTGAAAGCGTTATTAAATATCGGAAGCATTTGAGAAaacatgtttcatttaaatgCGACGAATGTGGAATGAGTTTTGATAAAATGTACAAACTAAAAAAACATAGCCAGACGCATAAAGTACtcgaaatttttaattgtatcgGATGTGGGGACAGCTTTAACAGCAAAAGTGAATTATCTAAACATGAAGAAATTCACAGTCAACCTAAAGAAGATGTGCAGTGTCCCAAATGTAATGTTTGGTTTACCTCGGCATTTTCACTTCGCAAACATCTCCAAAGACACGAGTCTTGGTTGTGTAACATATGCGGTAAATCTTTTACACATAAATTATACCTAACTCGCCATTTACAAATTCATTCCGATGAACGTCCGTATAAATGCGCAGTTTGTCACAAATCTTTCAAAACCAGAGCTGTTTTAAGTAAACATAAAGAAAGTCACTCACCGGAAAACAAGTATATTTGTCAAAACTGCGGAAAGACATTCCGAACGAGCAGTGCTATTCGACAACACATGCTGGTACATTCCCCAGAAAAAAAACATGTTTGTGATATTTGCGGAAGTTGTTTTAACCGGCGAGGAAACTTAGTAAAACACAGAGAAACACATAATTATATCCGCGAAGACTACAAATGTAGTATCTGCAACGAAGCATTCACCAATATGCTGTCTTATAAAAACCattggaagaaacatgaatccgTGGGTTCTAAACCATTTTGTTGTAGTATTTGCGATACTAAATTTGCGGATAAAGACAAATTACAAATTCATTTCCGGGTGCATTCCGGGGAGCGTCCATTCAACTGCAATTTCTGCGAAAAGGGTTTCCGAAGTAAACCATCTTTGAATCAACATCGAACGATCCACCTGGACATTTTTCCTTACGCGTGCGATTTTTGTGACCGGAAGTTCAAACGGCTGCACTCTCTGATTGTACACCGGAAGACGCACACTGGCGAGAAGCCGTTTCCGTGTCCGATTTGCTCGCGCTCGTTTGCTAATCGCGGGGATATGAACAAGCACCAGAAGATTCACGAGAGAAACATGGAAGGCGTTAACGGAGCAGAGACTGAGAATGTGATGCCATTTATATTAAGCAATGAAGAATCtgcttga
Protein Sequence
MSCLLNRPSKKPRNKILICAAKNCNNNSKETPLLKFFTFPNKEASARIWATNAGRDDILSKSFSVIKNYLLCADHFDEKYLNETKTIFKDNVDPIPTIFDKNFKWRETRLFAMDDIRAENSRTDNYISNDITIIQNYTEFDVEFGRFTYTDDLYEEFVANPEVLSLRTNYYDQLLVRDYCRLCAKQLPVANMVPLFGSQGSSYGEMLELCLPGKVKESDKYPHVICSSCIKRLEDCYKILKSFIEADHIIKKLVNKVEATTRLNDEINNPNSEQPVEDILNSIDDKSLITITTDLTSDQQEPIETVKQKEKKIKLQCVVCLKLFCNEKEISEHYLVSHHTQKKVFRLVKVELRKTVNNDVKIRNQNEEINDKLTEEIKYQCLKCRKIYKTKKKVIEHTLAVHPFTGKNKSEISYKLVKVKKKSEIKKETRETKYSSIRYECLLCSTHYKNKDILIKHTQRHHPNLKNGKLLCRILKPKQYRNHNVTCLRCSESFESVIKYRKHLRKHVSFKCDECGMSFDKMYKLKKHSQTHKVLEIFNCIGCGDSFNSKSELSKHEEIHSQPKEDVQCPKCNVWFTSAFSLRKHLQRHESWLCNICGKSFTHKLYLTRHLQIHSDERPYKCAVCHKSFKTRAVLSKHKESHSPENKYICQNCGKTFRTSSAIRQHMLVHSPEKKHVCDICGSCFNRRGNLVKHRETHNYIREDYKCSICNEAFTNMLSYKNHWKKHESVGSKPFCCSICDTKFADKDKLQIHFRVHSGERPFNCNFCEKGFRSKPSLNQHRTIHLDIFPYACDFCDRKFKRLHSLIVHRKTHTGEKPFPCPICSRSFANRGDMNKHQKIHERNMEGVNGAETENVMPFILSNEESA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-