Pcup008302.1
Basic Information
- Insect
- Poecilus cupreus
- Gene Symbol
- salm
- Assembly
- GCA_963942605.1
- Location
- OZ012713.1:42043193-42044739[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.016 3.1 10.0 2.1 1 23 125 149 125 149 0.91 2 11 2.2e-05 0.0042 19.0 2.8 1 23 155 176 155 176 0.97 3 11 9.3e-07 0.00018 23.3 3.6 1 23 182 204 182 204 0.99 4 11 1.7e-06 0.00032 22.5 1.6 1 23 210 232 210 232 0.98 5 11 8.2e-08 1.6e-05 26.7 1.9 1 23 238 260 238 260 0.98 6 11 0.00071 0.14 14.3 2.6 1 23 269 291 269 291 0.97 7 11 3.3e-05 0.0062 18.5 0.2 1 23 296 318 296 318 0.95 8 11 2.7e-06 0.00051 21.9 0.4 1 23 324 346 324 346 0.96 9 11 7.6e-06 0.0015 20.5 4.2 1 23 352 374 352 374 0.98 10 11 2.3e-08 4.4e-06 28.4 0.3 1 23 380 402 380 402 0.99 11 11 1.3e-06 0.00024 22.9 0.6 1 23 408 430 408 430 0.95
Sequence Information
- Coding Sequence
- ATGACTGTTGAAATTACATCTTTACAACTAGAAAAGATTTGTAGAGTCTGTTTATCTGAAGGGAATATGCAATCTATGTTTACAGAATCTATAGTCGActcaaaatcaatttatttatctgaAATGTTGACGTTTTGTACTTCAAttgagATTGCGGAAAATGATGGATTACCGTTTCAAATTTGTACGGAATGTTTGGAACAAGCACTAGAATCAGAAATAAAAAAGGAAGAAGCAAATTTAGAAACTTTTGAGATTAGAAatgataaaaacaaacagaaagaTGAAAATTGGTCGGATGATTTGTCTTGGGAGCCAGACTCAACAGAAAATAAGGTTAAAACAAGAAAGAAGCCCTCGAAAAGAGCACAGTTTTCTTGTAAAAAATGTGACATCAATTTTGAGTGTGCCTCGGATCTTGAGCAACATCGTTCAACAGTGAAACATCCGCGCAATCGAAACCATATTTGTTCAATTTGTCGTAAAGCTTTCACTTTCAGTCAACTTAAAGTTCACATGCGAACTCACACACAAGAACGGCCGTTTCGATGCGAGGTTTGTGGTCAAAAATTTACCTTAAACTGTAATTTACGTCGACACATGATGACACACACGGGGGAGAGGCCCCATCGCTGTAAATTATGCGGGAAGGGTTTTATTCAATCGACTACACTCAACGAACACTTAAGAATACACAGTGGGGAAACTCCGTTTGTTTGTAGTTTTTGTGGGAAAAGTTTTACTCAATCTGGCCAACTTAGAACGCACTTAAAACGTCATGAAGGTGAAACAATTGCACTCGAACACGAATGCAACATTTGCCAGCGAAAATTTCAAACGAAAAGTATCTTAAAAACTCATTTATTAATTCACGGCGAAAAAACATTTCTATGCAGCGATTGTGGCCGCGGTTTTGTCAGTAAAGCAGGGCTCCAATCCCACTCAAAAATACACACAGGGGCAAAGCCCTATTCGTGTCAAATTTGCGGGAAAACATTCAGTCAAGTCGGTAGCTTAAAGTCACATAATCTCATTCACACCGGACAAAAACCTTTCGTTTGTCGCGTTTGTAATCGAGGCTTTACGCAGAGAAATCATTTAAAGTATCACCTGAGGACTCATTCGGGGGAGAAGCCCTATGTTTGTTCCGTTTGTGGTAAGTCTTTTTCATTGAATGGAACTTTGACAGTTCATATGAGGACGCATACTGGGGAGACGCCCTATTTGTGCCCCATTTGTGGGAAGGGCTTCTATGATTCTAGCAGCATGAAGAAACATAAACGGGGGCACGGGGAACAAttgtaa
- Protein Sequence
- MTVEITSLQLEKICRVCLSEGNMQSMFTESIVDSKSIYLSEMLTFCTSIEIAENDGLPFQICTECLEQALESEIKKEEANLETFEIRNDKNKQKDENWSDDLSWEPDSTENKVKTRKKPSKRAQFSCKKCDINFECASDLEQHRSTVKHPRNRNHICSICRKAFTFSQLKVHMRTHTQERPFRCEVCGQKFTLNCNLRRHMMTHTGERPHRCKLCGKGFIQSTTLNEHLRIHSGETPFVCSFCGKSFTQSGQLRTHLKRHEGETIALEHECNICQRKFQTKSILKTHLLIHGEKTFLCSDCGRGFVSKAGLQSHSKIHTGAKPYSCQICGKTFSQVGSLKSHNLIHTGQKPFVCRVCNRGFTQRNHLKYHLRTHSGEKPYVCSVCGKSFSLNGTLTVHMRTHTGETPYLCPICGKGFYDSSSMKKHKRGHGEQL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -