Basic Information

Insect: Poecilus cupreus
Gene Symbol: -
Assembly: GCA_963942605.1
Location: OZ012716.1:921332-927765[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.0063 1.2 11.3 1.9 1 23 62 84 62 84 0.98

2 16 0.00022 0.042 15.9 0.8 3 20 90 107 89 109 0.94

3 16 1.5e-05 0.0029 19.5 2.1 1 23 112 135 112 135 0.97

4 16 0.0002 0.038 16.0 2.6 1 23 141 163 141 163 0.97

5 16 1.5e-05 0.0029 19.5 1.4 1 23 169 191 169 191 0.97

6 16 5.2e-07 0.0001 24.1 3.5 1 23 206 228 206 228 0.99

7 16 1.1e-06 0.00021 23.1 3.2 1 23 234 256 234 256 0.98

8 16 0.0011 0.21 13.7 3.3 2 23 264 286 263 286 0.94

9 16 0.029 5.5 9.2 1.5 2 23 361 383 360 383 0.94

10 16 0.00018 0.034 16.1 0.4 1 23 397 419 397 419 0.97

11 16 0.058 11 8.3 3.2 1 23 425 448 425 448 0.97

12 16 7.3e-06 0.0014 20.5 0.2 1 23 456 478 456 478 0.98

13 16 0.00054 0.1 14.6 1.6 3 23 506 526 504 526 0.96

14 16 8.6e-07 0.00016 23.4 0.2 1 23 532 554 532 554 0.98

15 16 2.3e-07 4.4e-05 25.2 2.5 1 23 560 582 560 582 0.98

16 16 0.00022 0.042 15.9 3.2 2 23 589 611 588 611 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.0063	1.2	11.3	1.9	1	23	62	84	62	84	0.98
2	16	0.00022	0.042	15.9	0.8	3	20	90	107	89	109	0.94
3	16	1.5e-05	0.0029	19.5	2.1	1	23	112	135	112	135	0.97
4	16	0.0002	0.038	16.0	2.6	1	23	141	163	141	163	0.97
5	16	1.5e-05	0.0029	19.5	1.4	1	23	169	191	169	191	0.97
6	16	5.2e-07	0.0001	24.1	3.5	1	23	206	228	206	228	0.99
7	16	1.1e-06	0.00021	23.1	3.2	1	23	234	256	234	256	0.98
8	16	0.0011	0.21	13.7	3.3	2	23	264	286	263	286	0.94
9	16	0.029	5.5	9.2	1.5	2	23	361	383	360	383	0.94
10	16	0.00018	0.034	16.1	0.4	1	23	397	419	397	419	0.97
11	16	0.058	11	8.3	3.2	1	23	425	448	425	448	0.97
12	16	7.3e-06	0.0014	20.5	0.2	1	23	456	478	456	478	0.98
13	16	0.00054	0.1	14.6	1.6	3	23	506	526	504	526	0.96
14	16	8.6e-07	0.00016	23.4	0.2	1	23	532	554	532	554	0.98
15	16	2.3e-07	4.4e-05	25.2	2.5	1	23	560	582	560	582	0.98
16	16	0.00022	0.042	15.9	3.2	2	23	589	611	588	611	0.97

Sequence Information

Coding Sequence: ATGTTAAGTTCAGAAGAAAACATTGAAATTCACGGCGAACCAGAAGAAATAGTTTGTAGCATCGATGTAAACATCAAAGAAGAGCCAATAGAATATGAATCAGATAAAGAACAATCACAAAATTTTACCGGAGACCATTTTCTAAGTTCTAAACAAGAAAATCTTACAGACAGCTCCTACACATTTACTTGCCAGTTATGTCAAAGTGGTTTCAATGATGAGTACGAATTTTTAAACCATAAACGCAAACATcgcaaagaaaaattatgtacaatctgtaacaaaatatacaaacacaaTAGTCATCTTCGAATTCATGCAACTGTCAAACCTTATCGATGTTCTGTTTGTCAACAAGGTTTCACAATGAAACAAAACCTACAGCGACACCAACTTCGGCGGCATTCAGGGCTACGCCCTCATGTCTGCAATGACTGCGGGAAAGCGTTTACTTTACGAGATCAGCTAAAATGTCACGCTAGAATTCACACTGGTGAACGACCATACGCTTGTAATTTATGTCCTAGGAAATTTAGCGATCGTTCTTATTACGGAAGACATATGAAACAACACGCTGCGGTTTCTAACGAACCTGGTGGAGAACCCCAAAGATTATTTAAGTGTCATATGTGCCCGAAATCATTTAATAGTTACAGTAACTTATACGGTCATATTCGAACACATACTCcggttaaaaaatatatttgtaacgAATGCGGAAAAGGGTTTCACCGTAATGCTCATTTGAAAAATCATGCGCGTACACATGCTAAAGCTCCGAAAGCTCTAGAGTGTTCGAAATGTGACAGGAGGTTTTGTTCGGATAGAAGTTTAAGAAAACATGTCGCTAGTAAACATGATGGTaaaaatgcACCGATTTCTCAAAAAACGGACAAGTTAGTGATCAAACAAGAGCCGATAAGTGATGACGAGGAAAATTGTGAAGTCGAACTTGAAATTTTAGATGATCTTAGCAATGTTCAATCAATTGAATCAGCTCAAAAATGTTCCAAATGCGGAATTCAGAATAAAGatcttcataattttaatgCTCAAAAATTGTGCAAAAGCTGTTTGTCAACATGTGAAAAATGTTcccaaacatttcaaaatttcagTGAAGTCCGTGAACACTACGATAAACAACACACATCACAAATTTCGCCGAATAGTGACATAGAAGTGAGTTTTATTTGTCCAATTTGCAAATATCGCTACACATCTGAGCGATTGTTACTCGCTCATAAGCGCGCGCATTCTGGTGAGCGACCGTATAAATGCACCGCTTGTGGTGATCGCTTCGCTTGGCAACATCATCTTCGACGTCATGTGCAATCGCAACATTCCTCAGACACCAAGCTTGCTTTTCCATGTACAGTGTGCCCCAGAAGTTTTCCAAATGTCGCCAAGTTGCAAATGCATATGAGGCAACATAGTGGACGGAGGATTTCCGATGAGGTTGAGGAGCTTTTTAAGCGAGAGGACGGAGTCCCCAGTGATAGAACTCCACTGTTCTGCTCAGTTTGCGGAAAAATGTTCTACGGACGCCACAAGTTGATGATTCACTCCCGGGTACACTCCGGAGAAAAGCCATTCGAATGTGAAGAGTGCGGAAAACGATTCACGCAAAGCGGATACCTCGCCTATCACGCCAGAATTCACACGGGCGAGAGGCCATTCGTttgtaaaatttgcaagaaggaTTTTACGCAGAAAACAACGCTTAGAACTCATATGCGAGTTCATCTAAAGAAGAATCCTGTCCAGTGTTCTATATGCAAGAGGAAAGTGTCTTATCAGTGTACGCTAAGGAGACACATGAAAATGGTACATGGTGTGACAGAAGATATAGACAATAATAATGTCAATCgaaaatgtgatattttatcGTAG
Protein Sequence: MLSSEENIEIHGEPEEIVCSIDVNIKEEPIEYESDKEQSQNFTGDHFLSSKQENLTDSSYTFTCQLCQSGFNDEYEFLNHKRKHRKEKLCTICNKIYKHNSHLRIHATVKPYRCSVCQQGFTMKQNLQRHQLRRHSGLRPHVCNDCGKAFTLRDQLKCHARIHTGERPYACNLCPRKFSDRSYYGRHMKQHAAVSNEPGGEPQRLFKCHMCPKSFNSYSNLYGHIRTHTPVKKYICNECGKGFHRNAHLKNHARTHAKAPKALECSKCDRRFCSDRSLRKHVASKHDGKNAPISQKTDKLVIKQEPISDDEENCEVELEILDDLSNVQSIESAQKCSKCGIQNKDLHNFNAQKLCKSCLSTCEKCSQTFQNFSEVREHYDKQHTSQISPNSDIEVSFICPICKYRYTSERLLLAHKRAHSGERPYKCTACGDRFAWQHHLRRHVQSQHSSDTKLAFPCTVCPRSFPNVAKLQMHMRQHSGRRISDEVEELFKREDGVPSDRTPLFCSVCGKMFYGRHKLMIHSRVHSGEKPFECEECGKRFTQSGYLAYHARIHTGERPFVCKICKKDFTQKTTLRTHMRVHLKKNPVQCSICKRKVSYQCTLRRHMKMVHGVTEDIDNNNVNRKCDILS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -