Pcup025631.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Poecilus cupreus
Gene Symbol
-
Assembly
GCA_963942605.1
Location
OZ012719.1:31662987-31673394[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.0026 0.49 12.5 2.0 2 23 161 182 161 182 0.98
2 15 4.1e-05 0.0078 18.2 2.9 2 23 189 210 188 210 0.97
3 15 1.9e-05 0.0036 19.2 3.5 1 23 219 241 219 241 0.97
4 15 3.2e-06 0.00061 21.7 6.5 1 23 303 325 303 325 0.97
5 15 0.0033 0.62 12.2 1.7 3 23 349 370 347 370 0.95
6 15 0.0006 0.12 14.5 8.7 1 23 445 467 445 467 0.95
7 15 0.00055 0.11 14.6 1.8 1 23 473 496 473 496 0.95
8 15 2.8e-06 0.00053 21.8 0.9 1 23 501 523 501 523 0.98
9 15 3e-06 0.00057 21.7 3.3 1 23 535 557 535 557 0.97
10 15 5.5e-07 0.0001 24.1 0.4 1 23 564 586 564 586 0.97
11 15 2.5e-05 0.0047 18.9 1.6 3 23 598 618 596 618 0.92
12 15 0.00021 0.041 15.9 5.3 1 23 624 646 624 646 0.99
13 15 1e-05 0.0019 20.1 1.8 1 23 652 674 652 674 0.96
14 15 2.8e-07 5.3e-05 25.0 0.3 1 23 680 702 680 702 0.99
15 15 0.0002 0.038 16.0 0.1 1 23 708 732 708 732 0.92

Sequence Information

Coding Sequence
ATGATTAACAAAGATAATGCGTTGTCCCTGGACAAGATATGTCGATCCTGTATGACCGAAGGTAATCAAATGAGATCAGTGTACGATACCAATACAGATTCAGTGCAGCTTGCGGAAATGATTATGGCTTGTGCTTCAGTACAGGTTGCAACAGGAGATGGTTTACCTGGGTTAATTTGTCCAAAATGTGAAGAGCAGCTAAACATAGCGTATGTGTTTAAGCAACAATGTGAGCGAACAGATGCTACTCTTAGGGAATACACAAATCATGCTATACCTGGATCTATAAAAGAGGAATCAGAATCTCTGGACATTGTCGTAAAACCAGATATTGATGTTTTGGAAATATATGAGAACGATAATGATGGTGGTCGTGATGATGACGACGATGATGATGATGACCCGTACTCAGGATCCGAGAGTGTTCATAGCAACTATTCAACTACTATTCGAAGAAAAAAGAAACCACCAAAAAATCGGCAATGCAGATTTTGTAATAAGATGTTGTCAACTAAAGAAGGTCTTAAACTACATGAAAGACGTCACACTGGTGAGAAGTTGAAAACATGTCCGGTGTGCCATGCGACATTCGCCAAATCTAACCACCTGATTAGACACATGTCAATGCATAATAAACCAACTGATGAATACAAGCACACGTGTCAAGAATGTGGCATGGGTTTCACGAAGGCGTCGCACTTGCTCAAACATCGACGTGAACACAAAGACTTGGGAGAGGACGCTGACGCTGCCGACGATGCGGGAGGTGAGGGCGGCTCACAGTCCACTGAGGCTACTGCCATCGTCAAGAGCGAAGTAGATAGCGACAATGACGCAGGCACTACCTCTACGAGCTCACGACCCAAGCTGCGACCTAAGAAGGAGCCCCTGGACATTGATAAACTTCACTCTTGTAAGaTTTGTTTGAAATCGTTTACAAAATCCAGTCACCTAACGCGTCACATGTTGACACACGGTGTACCGCCAGATAAGTCACCAGCCAAGGAAAAGAGTTCGGAGCCCAAAGAAAAGAAGTATATGGCCTGCGAGTTCTGCGACCGCAAGTTTGTGTACCGCAAGAGTTTTCTACACCACATTCAACTAGAGCACCAGATTTCCGAAGATAGCGACACACCACTTAGCGAGTACGCTACTATTATCACCAAGACTAAGTCTGAAGGGTCTACGCTTAATTCTTCTACTGGAAATGCCGAGAATGGTGGAAATGGAGAGGGTGGTGAGCAAACCGGGGGCAATGGCGCCGACCAGCAACTAGGCACTGGGGATGATGACTTCGAGGAGTTCATGCGGCAAGAGGAAGCGAAGAAGGTGCATGCATGTCATGTGTGTAATCATAAGTTTACAAGAGCCAACCACTTGACGCGTCACATGACGCTGCATCGTGCTGTGCTTGTCCACAAATGTGATCGATGTGAGAAGGCTTTCATGACACCTGAACACCTCGCCACGCACGTTCAGGAGTATCACGTAGATCGGCCGTATGTGTGCTCACTGTGCAACAAGCCATTCAGTCGAGGCGAACACCTGATTCGGCACCTGAAAGTTCACGACAAAGAGACAGGTAATGGCGGCCCTGACGAGCACAAATGCTCCATTTGTGAGAAAGTGTTTGCGCGCTCTGACCATTTGGCACGCCATACGAAACTACATTTGGCACAGGACAAACGTCACGTATGCGGCGAATGCGGTAAGGCATTCAATCGCCTCGACAACTTGCGAACGCACGCACGCATCCACACGGGTGTGCGGGATCCGCAGCGGCTGCATCTCTGTATCTACTGCGGCAAGGAATTCAACAACTCCAGTAACATGATCGTGCACATGCGGCGGCACACCGGCGAACGGCCTTACAAGTGCACGCAGTGCGGCAAGGGCTTCCCACGCTCGCACGACCTCAAGTGCCACGAACGCACGCATAGTGGTGAGAAGCCCTATTTATGTACGTTGTGCGGTAAGTCTTTCAACAAGAGCAACAAGCTGCTGCGACATACCCGAGTGCATACTGGAGAACGACCTTATGTTTGTTCGCTTTGCGGACGCGCGTTCACCCAGTCCAATGATCTAGCGCTCCATATGCGGCGACACACGGGCTCCAGACCATACGCGTGCGGCATGTGTCCGGCACGGTTCATCCAATCTGGACAACTGAAAGCTCACCGTCGCTCGCAAGGCCACTGGTTGGAAACTCAACCGGAGCTGAAAGGCGCGCATCGTGTCACCCCTGTTACTCCGTTAGTGAATCCTCCGCCTATAAAATTCAAGACACGAGTGCAACGCATTAAGGAGGAACCATCGATACTTGGACATACTATTGGAGTGGGCGTAAATTTGGTTGGAGTGGTAGCAGCGGCAGCTGCTGCGGCTGCGGCTGCAGCATCCAAAGAGAGCGGCGACCAGAGCACGATCGTTGAGGCGGGAGCCCCGGCAGATAGTGGCGCCTCGCCTTTCTTCGTGCACGGCCAACGGGAACAGCAGCAGCCACCTCAGCCCAAGGACTTGAAGATGGAGGAGGTACATAATTTCAGCATAACCAACCTTAGTCGAGAAACGAGTGGGCCTGGCTCTGCTGGATTCCCCCAAGTCACGGGGCCCAACGTCGTCGAGCCGGGCACATCTTTCTCCAACAGCATTGCAATGACGTCGAATTCGTTCGCTGTAAGCGAGAGTTACACCACGTATCAAACTTATGGTTGA
Protein Sequence
MINKDNALSLDKICRSCMTEGNQMRSVYDTNTDSVQLAEMIMACASVQVATGDGLPGLICPKCEEQLNIAYVFKQQCERTDATLREYTNHAIPGSIKEESESLDIVVKPDIDVLEIYENDNDGGRDDDDDDDDDPYSGSESVHSNYSTTIRRKKKPPKNRQCRFCNKMLSTKEGLKLHERRHTGEKLKTCPVCHATFAKSNHLIRHMSMHNKPTDEYKHTCQECGMGFTKASHLLKHRREHKDLGEDADAADDAGGEGGSQSTEATAIVKSEVDSDNDAGTTSTSSRPKLRPKKEPLDIDKLHSCKICLKSFTKSSHLTRHMLTHGVPPDKSPAKEKSSEPKEKKYMACEFCDRKFVYRKSFLHHIQLEHQISEDSDTPLSEYATIITKTKSEGSTLNSSTGNAENGGNGEGGEQTGGNGADQQLGTGDDDFEEFMRQEEAKKVHACHVCNHKFTRANHLTRHMTLHRAVLVHKCDRCEKAFMTPEHLATHVQEYHVDRPYVCSLCNKPFSRGEHLIRHLKVHDKETGNGGPDEHKCSICEKVFARSDHLARHTKLHLAQDKRHVCGECGKAFNRLDNLRTHARIHTGVRDPQRLHLCIYCGKEFNNSSNMIVHMRRHTGERPYKCTQCGKGFPRSHDLKCHERTHSGEKPYLCTLCGKSFNKSNKLLRHTRVHTGERPYVCSLCGRAFTQSNDLALHMRRHTGSRPYACGMCPARFIQSGQLKAHRRSQGHWLETQPELKGAHRVTPVTPLVNPPPIKFKTRVQRIKEEPSILGHTIGVGVNLVGVVAAAAAAAAAAASKESGDQSTIVEAGAPADSGASPFFVHGQREQQQPPQPKDLKMEEVHNFSITNLSRETSGPGSAGFPQVTGPNVVEPGTSFSNSIAMTSNSFAVSESYTTYQTYG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00769012;
90% Identity
-
80% Identity
-