Pcup048861.2
Basic Information
- Insect
- Poecilus cupreus
- Gene Symbol
- ZFX
- Assembly
- GCA_963942605.1
- Location
- OZ012730.1:924818-928756[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00034 0.064 15.3 0.2 2 23 119 141 118 141 0.95 2 15 0.0025 0.47 12.6 3.5 1 23 148 170 148 170 0.97 3 15 0.0062 1.2 11.3 2.0 1 23 257 279 257 279 0.95 4 15 1e-05 0.002 20.0 3.1 1 23 282 304 282 304 0.97 5 15 0.002 0.37 12.9 2.1 1 23 323 345 323 345 0.93 6 15 4.5e-06 0.00086 21.2 0.4 1 23 348 370 348 370 0.96 7 15 0.00069 0.13 14.3 2.2 2 23 389 410 389 410 0.98 8 15 0.0033 0.62 12.2 0.2 3 23 417 438 416 438 0.94 9 15 6.5e-06 0.0012 20.7 0.2 3 23 446 466 444 466 0.96 10 15 0.00067 0.13 14.3 0.0 1 23 472 494 472 494 0.98 11 15 1e-05 0.002 20.0 0.2 1 23 500 522 500 522 0.94 12 15 5.3e-06 0.001 21.0 0.1 1 23 528 550 528 550 0.98 13 15 6.6e-06 0.0013 20.7 1.2 1 23 556 578 556 578 0.97 14 15 7.2e-08 1.4e-05 26.8 0.4 1 23 584 606 584 606 0.98 15 15 4e-05 0.0076 18.2 4.1 1 23 612 634 612 634 0.99
Sequence Information
- Coding Sequence
- ATGGCGTACTCGAGAATTTCTAAATGCCGAACATGTTTGACAGAATctcaaaatatgaaattgttaACTGCTGATTATTTAGTTTGTGGCGAATTGCTGACCATTTCTGAAATAATTACATCATGTACCAACATTCAGatcATAAACGATGACCGATTTCCAAATTATATTTGTGACAATTGTCTACAAGATGCAAACACGGCATATTCCTTCAAAAAAAGATGTGAGCAATCAGAGAATTACTTGAAATCACATTTAGAAGATTCAAAAAAAGTAAACAAAGATGTAAAGGACAATCAAAACTTTGTCGTACTTTCTCAATTTGTTCCCAATGAGGAAACAGAATCTTATGTCCAATGTACTAAATGCCCTGTTAAATTTACTACGCAAGTAGATTTGGATAAACATGTATCTTCAGttcataataaaagtaaaacaaaacataaatgtaatttctgtggtaaattatttacatctgaaacaattttaaataaacatatgtaCAGTCATGCTTCAAATACTTTACGTGCTATGAGAAAATCTACGAAAaagactataaaatatatttctagtcCAGTACATTCCGATGGAGACAATGAATCAGTTCACtctgaagaagaaataaaacaagaaattaaagCTCAACCAGAAGAAAACAGTTTAGATACATTTATGTCAGAATTAGTAGATGTAAAAGTAAATACCAAAACAGAAACAGATtggtttaaaatattgaaacatgcaaaagaaaaaaatgaaaatggaTTATACGAATGTTTATGTTGTCCAGAAACTTTTTCTGATACAAATGAACTACGAAAACATACGTCATCACATACCTCTTTCATAtgtaaattatgtaataaaaagtttacTCTTTTATCGAATTTACGTAGACATTATAAATTACACGATACTTCCGAAACGAAATTTGATTCGTTTAAAGAAAATATCTCTAATACAGAATATAAATGCATAGCTTGTCAGAAAGTCTTTACTAGACGCAAATTTTTGAGCGAACATTTGAAAACTCATAAAGAATTTAACTGCCCAATCTGCAACGCCAAATTTACCTATGCAACAAATTTACGAAAACATATCAGCTGGCACAACAGACCTAAAGACGCAGTCAGAGTTTGGAAACAGCCTCCAACAGAAAAAAGAACTTGTGATATTTGTTTCAAAGTCTTTAAATACCGCCCCAGTATGTTAAAACatcggaaaaaacatgaatttagtgGCAAAGCTTGTAAATTTTGCGacgaaatttttgaaaacgcgattaaattatataaacatatggAAGAAAATCACGAAcatgagaaaaatgttatttgttctGTGTGCGGCAAGAAATTTTTCAGAGAATGGAATCTAAAGATGCATATGATTGTTCATACTGGGGTCAAACCGTACATGTGCGAAATATGTGGCGCGAGTTTTGCTCTCGGCGGAAATTTGGCATCGCACAAGCGGTTACATACCGGCCATAAACCATATAAATGTTCAACATGCGGTCGCGGATTCACTCAACAAGCTGCACTTCGTTCTCACGAAGCCGGCCACTCAGACCGGCGAGACTTCATCTGCCCGGACTGTGGGGCCGCATTCTCCCGCGCAGGAGCTATGCGGAACCACCGCAAGAGACACCAGTCAACCCGGCCTTTCCCTTGCGGCATGTGCGGCAAGAGATTTACATTCAGTTCGGAAAGGAAACGTCACATGACAATTCACACCGGGGAGAAAAATTATGTTTGTGATTTTTGTGGGAAAGCATTTAACCGGCCGACGAATTTAACTGTACATCGAAGAATCCACACTGGAGAATGTCCGTATAAGTGTGATGTGTGCGGAAAGGGATTTGTGCAAGCCCATTGCATGAGAACGCATCGGAATACGCATAGAGAGGCGGCAGCGAAGCAAAATGTTATTGCCTCGGAAATGACAACACAAGAAGTAACACCGCCCGAAAATATACAGATGTAG
- Protein Sequence
- MAYSRISKCRTCLTESQNMKLLTADYLVCGELLTISEIITSCTNIQIINDDRFPNYICDNCLQDANTAYSFKKRCEQSENYLKSHLEDSKKVNKDVKDNQNFVVLSQFVPNEETESYVQCTKCPVKFTTQVDLDKHVSSVHNKSKTKHKCNFCGKLFTSETILNKHMYSHASNTLRAMRKSTKKTIKYISSPVHSDGDNESVHSEEEIKQEIKAQPEENSLDTFMSELVDVKVNTKTETDWFKILKHAKEKNENGLYECLCCPETFSDTNELRKHTSSHTSFICKLCNKKFTLLSNLRRHYKLHDTSETKFDSFKENISNTEYKCIACQKVFTRRKFLSEHLKTHKEFNCPICNAKFTYATNLRKHISWHNRPKDAVRVWKQPPTEKRTCDICFKVFKYRPSMLKHRKKHEFSGKACKFCDEIFENAIKLYKHMEENHEHEKNVICSVCGKKFFREWNLKMHMIVHTGVKPYMCEICGASFALGGNLASHKRLHTGHKPYKCSTCGRGFTQQAALRSHEAGHSDRRDFICPDCGAAFSRAGAMRNHRKRHQSTRPFPCGMCGKRFTFSSERKRHMTIHTGEKNYVCDFCGKAFNRPTNLTVHRRIHTGECPYKCDVCGKGFVQAHCMRTHRNTHREAAAKQNVIASEMTTQEVTPPENIQM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01275576;
- 90% Identity
- -
- 80% Identity
- -