Pcup022893.1
Basic Information
- Insect
- Poecilus cupreus
- Gene Symbol
- -
- Assembly
- GCA_963942605.1
- Location
- OZ012719.1:7759387-7761346[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.4e-07 2.6e-05 26.0 4.5 1 23 163 185 163 185 0.99 2 12 3.5e-06 0.00068 21.5 1.4 1 23 191 213 191 213 0.96 3 12 1.8e-07 3.4e-05 25.6 1.2 1 23 250 272 250 272 0.98 4 12 1.4e-05 0.0026 19.7 4.2 2 23 284 305 283 305 0.97 5 12 2e-05 0.0038 19.1 1.1 1 23 311 333 311 333 0.97 6 12 2.8e-07 5.4e-05 25.0 1.8 1 23 339 361 339 361 0.98 7 12 1.2e-05 0.0024 19.8 0.7 1 23 367 389 367 389 0.95 8 12 0.00019 0.036 16.1 0.2 3 23 397 417 395 417 0.96 9 12 1.8e-06 0.00034 22.5 2.9 1 23 423 445 423 445 0.98 10 12 8.8e-05 0.017 17.1 0.8 1 23 451 473 451 473 0.99 11 12 1.7e-05 0.0032 19.4 0.3 1 23 479 501 479 501 0.98 12 12 5e-07 9.5e-05 24.2 0.6 1 23 507 529 507 529 0.98
Sequence Information
- Coding Sequence
- ATGGAAGAACCAGTACTGTCTAAAATATGCAGAGCATGTTTGACAGAAGACGGAGAAATGAAATCGGTTTTTGTTTCTGATGAAAGAACTGGTTCAACCATACATTTAGCTGAAATGATCATGGCATACGCCTCTGTGCAGATTACCTTAGGCGATGGTTTACCAGAGCAAATTTGTTTATCATGCGCCGACAAAGTTAGCAAAACGtatgtttttaaacaaatgtgTGAAGGTTCTGACGCCTTACTGCGTCAAAGATTAGGAAAGTCCCCTTTGTCAAAGAAAGAATCCTCACATAACGATATGGACATACACTCGGACACAATAAATATAGTCATAAAACCTGAAATCGACTTAGAACAGGATCACTCAGATGATGATTTCGATAACGATAATATTGAAACATTAGAGGAGGATTTCCAGGACGAAGATAAAGCTAGTGACATAGACGATAGTGATTCAGATTATAGCCCTAAAAAGACTACATACAAgtgtgaaatttgtaaaaaagtgTTTAATAGACAGAGTCATTTATCTCGGCATCGTAATATGCATTGTAACCTTAAGCCACACATTTGTGAAGTTTGTAATAAGGGATTTACCAGACAAGATCAACTACTTCGACATAAAATTATGCACACTGATGaaaaagtagaaaaaataaagatcGAAGGTGAATTATTAGTTGAAGCAAAGGAGGAAATTGATTCATCTACGGAACTAGATGACGGCGAGGAAAAAGATAAGTACAATTGTGCTGTGTGTGACAAAGAATTCACGAAAAAGGAAAGCCTAACAACTCATATGCGCACTCATATGAAAGCCCAAAAAGAGAAAGACAAAGTTTTAGTGTGCCATGTGTGTTCCAAAAAATTCATGAAACCCAGCCATCTAACGCGTCACTTAAAAATCCACGCAGCAGTCAAACCTCACGTTTGCACTCTCTGTAATAGAAGTTTTGCTCGCGGCGAACAACTAATGAATCATATGAACCTCCATTCTGGCATCAAACCCCATGTGTGCAACATTTGCTCCAAGGGATTCAACCAAATCAGCAACTTGAAAGATCATATGCGTACTCATAACGGCGAGAAACCTTTCCTCTGTTCAACTTGCGGTAAAGGCTTCAATCAGTTGGGGAATTTACGTCAACATACAATTCGTCACAGTGGAATCAAAGCCCATTTGTGTAGTATTTGTGGTAATGGCTTTGCCAGTAAAGGAGAGTTGGGCGCTCATTTGCGGAAACACACCGGTGCGAGACCATTCGTTTGTTCAATCTGTAATCACGGTTTCACAACTTCATCCTCTTTAACTAAACATAAACGAATCCACAGCGGCGAAAAGCCTTATGAATGTGAAGTTTGCAAGATGAAATTCTCGCGCAGTGGAATTCTGGCTCGTCATAAACGAACCCATACTGGAGAAAAGCCCTATGTTTGTAAGTTTTGCGCCAAGGCTTTCGCGCAAAGCAATGATCTTAGTTCTCATTTGCGTATTCATACTGGAGAGAAACCATTTATTTGTGACGTTTGTGGACAAGCTTTCCGGCAGAGTTCTGCCTTAAAGACACATAAGAAGACTCACATGGATCGAACGCAGATTCTTATAGGTCACACGCATCCTCATGCACACGCACACATGGACGCAAGGGCCCAATTGCTGGACAACAAAACAGCGATTTCCATGATGCATACCACGCTGTTGAATAATGTCATACAATGA
- Protein Sequence
- MEEPVLSKICRACLTEDGEMKSVFVSDERTGSTIHLAEMIMAYASVQITLGDGLPEQICLSCADKVSKTYVFKQMCEGSDALLRQRLGKSPLSKKESSHNDMDIHSDTINIVIKPEIDLEQDHSDDDFDNDNIETLEEDFQDEDKASDIDDSDSDYSPKKTTYKCEICKKVFNRQSHLSRHRNMHCNLKPHICEVCNKGFTRQDQLLRHKIMHTDEKVEKIKIEGELLVEAKEEIDSSTELDDGEEKDKYNCAVCDKEFTKKESLTTHMRTHMKAQKEKDKVLVCHVCSKKFMKPSHLTRHLKIHAAVKPHVCTLCNRSFARGEQLMNHMNLHSGIKPHVCNICSKGFNQISNLKDHMRTHNGEKPFLCSTCGKGFNQLGNLRQHTIRHSGIKAHLCSICGNGFASKGELGAHLRKHTGARPFVCSICNHGFTTSSSLTKHKRIHSGEKPYECEVCKMKFSRSGILARHKRTHTGEKPYVCKFCAKAFAQSNDLSSHLRIHTGEKPFICDVCGQAFRQSSALKTHKKTHMDRTQILIGHTHPHAHAHMDARAQLLDNKTAISMMHTTLLNNVIQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01104937; iTF_00767426; iTF_00470157; iTF_00029536;
- 90% Identity
- -
- 80% Identity
- -