Pcup048860.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Poecilus cupreus
Gene Symbol
-
Assembly
GCA_963942605.1
Location
OZ012730.1:918576-924006[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.0037 0.7 12.0 0.0 2 23 158 180 157 180 0.95
2 16 2.6e-05 0.0049 18.8 1.4 1 23 185 207 185 207 0.98
3 16 1.6e-05 0.003 19.5 0.1 1 23 230 252 230 252 0.98
4 16 1e-05 0.0019 20.1 4.5 1 23 271 294 271 294 0.97
5 16 0.0034 0.64 12.1 1.3 1 23 307 330 307 330 0.91
6 16 0.0038 0.73 12.0 0.2 1 23 345 367 345 367 0.99
7 16 0.00081 0.15 14.1 1.0 1 23 380 403 380 403 0.94
8 16 8.6e-06 0.0016 20.3 0.0 1 23 424 448 424 448 0.96
9 16 0.1 19 7.5 0.9 2 23 455 477 454 477 0.95
10 16 4e-07 7.6e-05 24.5 2.9 1 23 483 505 483 505 0.98
11 16 0.0002 0.039 16.0 1.3 1 23 511 533 511 533 0.98
12 16 1.3e-05 0.0026 19.7 1.3 1 23 539 561 539 561 0.98
13 16 0.00078 0.15 14.1 1.7 1 23 567 589 567 589 0.98
14 16 0.0009 0.17 14.0 0.9 1 23 595 617 595 617 0.98
15 16 7.1e-07 0.00014 23.7 1.9 1 23 623 645 623 645 0.96
16 16 9.3e-06 0.0018 20.2 1.3 1 23 651 673 651 673 0.98

Sequence Information

Coding Sequence
atggcaGAAATTACTACTGATCAGTGTCGAACATGTTTACTCAGAGAAACAGAGATGGTTTCTTTAATGGCAGATCATGTAGTATGTGATAAGGTTATGTCTGTGCtagatttaataaaaacatgtactTCTGCACAGATTGAATTTGAAGATGGTTATCCGCAATTTGTTTGTGTGGGCTGCATACATTCGGCAGAGAAGTCGTACGAGTTTAGAATCCAATGTGAGAAAGCTGATAGTTCTTTAAGAGctcaatttgaaaattttgaaaataatatatgtaaaatttctGAACCTCAGGAAGAGAATGATATAGATTGCGATGATATAGGTGCTGAAGATTATGTTGTGTTGAACTCAGAGTTTGAAGCTGACGAAGTGAATGAAACAGAcgaagtaaattatttaaatctgttgCAAGATAGAGAAGATATAAAATGTGAAGAAGTCGAAATAGGAGATACTTCAATATCGTGTTCTGTTTGCAATTTAATATTTCCATCGACAGCAGCTTTAGCAAAACACACGAATTCTGCTCACCAACCTAATTTTTACCAATGCCTTCACTGTCCTGTTAGATTCATCACGCGAGATTTATTAGAGAAACATATTACTAAACATaatcaaaataacaaaacaggaaAAATACAAACTGTAAGAAATTCTAAACGGAAAAGGAAAATCGATTACATATGCGCAATATGTGGCAAAAAATATGCCAGTTTGGGTGCTTTGAATTCACATGTTCGTAAACATTCAAAAGGCAAAGAAAAGTTGAGAAACAGTAACGATCCCACAGAACAACCCATATTCATTTGTCATGACTGCGATCATCATTTTGTTACCTCCTCAGATCTTCAGATGCACATGGAAACAATGCACAATCTAAAGAGTGAAGATAATACCAACCCAACTAGATTTCgttgtaaatattgttataaactaTTTCCGAACAACGAACGTTTACAAGAACATTTAGACGATACCCATcataaaaagaagaaaactgTAACACAACAAAGTAAAGTttcatataaatgtaaaatttgttctGAATCTGCCAAATCTTTACCAGATATCAAAGATCACTTGCAAACTCACAATATATCATCTAAagatttatttaatcatttatcatACCAATGTACCGATTGTGACAAAGATTTCGAAACCATTTATGAGTATTTCACTCATTCGTCAAGTGTACACGGAGGGACGAAAATAGAAAACAGTACTGCGGGGTCTACCCGAGTTGTCAGAAAACGACCTTACGCTTGTAACGTAGCAGATTGCGATAAGGCTTTTCCTTCTCCGAGTGCTTTGAAAAAACATTCCATAACACATGAATCCCAATGGCCAAAAAAGTGCCGCTATTGCAATACCATTGTCAACAAATGGCAAGagtatatttcacatttaaatcaACAACATGATGAGAAAAAAACTTTCGTTTGCACACAATGCGGTAAGAAATTCTTTCGGGAACGAAATTTACAAAGCCATATGAAGACGCATACGGGGGAAAGAAATTATATGTGTGATTTCTGCGGATTTAGTTTTCATGCCCAAAATAatttggtGGCTCACAGAAGGATACATACTGGAGTGAAACCGTACAAATGTACGTATTGTCCGCAAGCATTTTCGCAGCACGCAGGTTTACGATCTCATTTGTTAAATCATACTggagaaaagaaacatgaatgtccCACTTGTCGAAAGAAATTTTTACGAATTGGCGCCCtcaaaaatcatataaaaacacatacagGCGTGAAAGATTATGCCTGTCATATTTGTGGAGCAAGATTTGGTGCGTCTTCGACTAGAAAAAAACATCTCCTTACACATacagGAGAAAGAAATCATATTTGCGATTTCTGTGGAAAAGCATTTTCCAGAAGGTCAAATTTGTCGGTTCATAGAAAAATTCATACTGGAGAAACTCCTCATGTATGTGAACTTTGCGGAAAAGGATTCATACAAGCACATGTTCTACGGTCTCATATGAACACGCATAGAAAACGCGGTGAAAATGAAATTGTAAGAAAGCcgccaaaaactaataaaactgCGGGGAAGAAAATGATAAAGCCAGATGAACCAGCAGAAGATATTACGGTGTTAGTAGAATTTAATCAAGAATGA
Protein Sequence
MAEITTDQCRTCLLRETEMVSLMADHVVCDKVMSVLDLIKTCTSAQIEFEDGYPQFVCVGCIHSAEKSYEFRIQCEKADSSLRAQFENFENNICKISEPQEENDIDCDDIGAEDYVVLNSEFEADEVNETDEVNYLNLLQDREDIKCEEVEIGDTSISCSVCNLIFPSTAALAKHTNSAHQPNFYQCLHCPVRFITRDLLEKHITKHNQNNKTGKIQTVRNSKRKRKIDYICAICGKKYASLGALNSHVRKHSKGKEKLRNSNDPTEQPIFICHDCDHHFVTSSDLQMHMETMHNLKSEDNTNPTRFRCKYCYKLFPNNERLQEHLDDTHHKKKKTVTQQSKVSYKCKICSESAKSLPDIKDHLQTHNISSKDLFNHLSYQCTDCDKDFETIYEYFTHSSSVHGGTKIENSTAGSTRVVRKRPYACNVADCDKAFPSPSALKKHSITHESQWPKKCRYCNTIVNKWQEYISHLNQQHDEKKTFVCTQCGKKFFRERNLQSHMKTHTGERNYMCDFCGFSFHAQNNLVAHRRIHTGVKPYKCTYCPQAFSQHAGLRSHLLNHTGEKKHECPTCRKKFLRIGALKNHIKTHTGVKDYACHICGARFGASSTRKKHLLTHTGERNHICDFCGKAFSRRSNLSVHRKIHTGETPHVCELCGKGFIQAHVLRSHMNTHRKRGENEIVRKPPKTNKTAGKKMIKPDEPAEDITVLVEFNQE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-