Pcup034760.1
Basic Information
- Insect
- Poecilus cupreus
- Gene Symbol
- -
- Assembly
- GCA_963942605.1
- Location
- OZ012723.1:8256350-8264368[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 1.5e-05 0.0028 19.6 6.5 1 23 167 189 167 189 0.96 2 17 8.1e-06 0.0015 20.4 0.1 1 23 195 217 195 217 0.97 3 17 1.9e-05 0.0036 19.2 4.2 1 23 318 340 318 340 0.95 4 17 0.00042 0.081 15.0 2.6 1 23 346 368 346 368 0.98 5 17 0.0002 0.039 16.0 1.9 1 23 374 396 374 396 0.94 6 17 0.00017 0.032 16.2 2.0 1 23 402 424 402 424 0.97 7 17 0.0055 1.1 11.5 0.7 1 14 430 443 430 445 0.91 8 17 3e-05 0.0057 18.6 3.3 1 23 542 564 542 564 0.96 9 17 7.3e-05 0.014 17.4 1.1 1 23 570 592 570 592 0.98 10 17 0.00059 0.11 14.5 3.3 1 21 598 618 598 620 0.95 11 17 5.8e-05 0.011 17.7 2.3 1 23 626 648 626 648 0.97 12 17 1.7e-05 0.0033 19.4 5.4 1 23 654 676 654 676 0.98 13 17 0.0015 0.29 13.3 2.1 1 23 681 703 681 703 0.98 14 17 5.5e-06 0.001 20.9 3.2 2 23 709 730 708 730 0.97 15 17 9.9e-06 0.0019 20.1 1.4 2 23 737 758 736 758 0.97 16 17 4.3e-07 8.3e-05 24.4 1.0 1 23 764 786 764 786 0.98 17 17 0.0018 0.33 13.0 6.9 1 23 792 815 792 815 0.98
Sequence Information
- Coding Sequence
- ATGTTAAGTTTTCCCAATTTATGTCGCTTGTGTATGTCATTAGAAAATCTTAAGTTTAACATAGAATCAGCTGATTCAAATAACATCACAGTGCATGACAAGTTGAAATGGCTCGAACCCAATTTAATTCAACCCgatgatcatttaccaatattaATTTGTGGAATTTGTCATGAAAAACTTAATCTAGCTTTCATATTTAAAGAACAATGTTTACAGtcatatgaaaaattaagaaattatacAGAGAACTTTTTCCAAGTATCAGAACAAGAGGTTAATGGTGTGAAACAAGAATTGGAAGTTCCTGAAGAACACTTTGATAATTCAAATTCTGATGTAGATAATGATGTTACATCGGACTTAATTTGTAAAACTGAAATAAAAGAGGATGAATGTGAATTTTCCGCTACAGGAATTGAACAGCCCCAGTCTGCAAAGAATAAAAGAAatcGACAGTATGATATACATTTTAGACTTCATTCGAATGAAAAGCCATATTTATGTACTTATTGTGGGAAAAGATTCAGAAGACATGATCACTACAAAAATCATGTTAGAattcatacaaaagaaaaaccTTTCGCTTGTGATATTTGTGACAAAGCCTTTGCACAAAAAACTAGTTTAGTAGTTCATAAGAAGattcacaataatttaaaaccatTTGATTGCGAGCAGTGTGaaaataaCGAGGATGAAAATAGCAATTTAAGTACGGCAGATTGTAAAGCATCAAAATCTGTAGCTCAACAGGAAATTAATCAAGAAGATGTGGAACAGGATTCAAATTCAGATGCTGAAGACGAACCAAATGCAGAGGAGAATAATCAAAATACAGATAATTCCGTAAATTCTTTGTTACCAAAATTAAAACGAGCACCCAAATCAACAACTTTTCCATCATCAATCGACCGTTCAACttatatattagacaaaaagaaaaatattttcctttGTAAAACGTGCAATAAACATTTTGCAAATCGGGATTCCTTAAAGAATCACATGCTACGGCATACAGGTATCAAACCTTTTTCTTGTAAACTGTGCGATAAAAAAACTTTTACATACACTTCTCTAAAATCTCACATGCTGGTCCACGCAAAAGAACTGCCATTTTTGTGCGAAGTTTGcaataaatcatttaaagaCAAAAATCGGTTAGGGCAACACATgaaatttcattctaaaaatCGTCCTCATATGTGTGACATATGCGGGAAGAAATTTGTGCAAGTCTGCGGATTGAAAACTCATTTACTAATACACAGTGACGAAAAAAATTACCAGTGTAATATTTGTCAGAAACGTTTTAAAACACAAGTTTCAAATGATACCTATGAAGTCAATCCATCTAATATTGTAAAAGAAAATGGTAACGTTAAAGCTGAATATCCAATAGTTCCAGAAGATAAAGCGGAATCTGTACATAATGAACAATGTAATAATGATGAAGAAGAATGCAGTTCTGAAAGTGAAGACGAGGATTCTCAAACgattgaagaaaattattcacAATCAATTGAAAATACATCAAAGCGGAAATCCAACTTACGATCAAAATTATTTCCTGCATCTATTGACCATTCATCGTATATAATCGATAAAAAGAATAGTATTTATCTGTGTAAAACGTGCAATAAgcattttgcaaataattattcTCTAAAGGCGCATTTATTAAGACATACTGGTAATAAACCTTTTTCGTGcaatatttgtaataagaaaACTTTCACCTATGCAGATTTAAAATCGCATATGCTCGTTCATGATAATAACTTGCCATTTAGCTGCAGTATCTGTCAAAAATCATTCAGAAACGAAACTAGATTAGAAACGCATATGCTTTGTCACAAAGAAAACCGACCTCATATGTGCGAAATTTGCGGGAAAAGTTACGTTAGAGATTGTAATCTTCGAGTTCATTTGTTAAGCCATAGCGatgaaaaaaaatatcagtgcaatatttgtcaaaagaaatttaaaatgtgtAGTTCATTAAAAACGCATATGGATCGACATATGAAACGCACTTacaaatgcaaaatttgtgaCAAGGTGTATAAATCAACAGGAggatattattttcatttaaggACACATAACGAGAAAAACATTAAATGCAATTTGTGTGATaagactttttattttaaaagtaaattaaagatGCACATGAAGTCTCATACTAATGAAGTGTCTGTAACTTGTCCAATTTGTAAGAAACAATTTACAACGAATAGTGTTCTTAAACACCATCTTTTGGTACACACTGGCGAACGACCGTATGTGTGTAAAGTTTGTAATAAAACTTTTCGACAATCGGGAACTTTATCAGTACATATGAAACTTCATACTGGAGTCAGGCCATATAAATGCCAGTTATGTGAAAAAGGATTTATTAAAAGtcatcattattataatcacaTGAAGAGGCAACATTCATCTGCGgcATCAATGATGAAAATATTGCACTCTGGGTTCCTCAGGATTCTACTGAGTTCTGATGGTACAACTAACCATCCGCTCAACCTGTCGAGTTCACCTAAACGACTGCAACATTTTCAACAAGGTTCAACTTCTGCAGACCTGGAAGAATATCCTTCAATGTtcaatttctcataa
- Protein Sequence
- MLSFPNLCRLCMSLENLKFNIESADSNNITVHDKLKWLEPNLIQPDDHLPILICGICHEKLNLAFIFKEQCLQSYEKLRNYTENFFQVSEQEVNGVKQELEVPEEHFDNSNSDVDNDVTSDLICKTEIKEDECEFSATGIEQPQSAKNKRNRQYDIHFRLHSNEKPYLCTYCGKRFRRHDHYKNHVRIHTKEKPFACDICDKAFAQKTSLVVHKKIHNNLKPFDCEQCENNEDENSNLSTADCKASKSVAQQEINQEDVEQDSNSDAEDEPNAEENNQNTDNSVNSLLPKLKRAPKSTTFPSSIDRSTYILDKKKNIFLCKTCNKHFANRDSLKNHMLRHTGIKPFSCKLCDKKTFTYTSLKSHMLVHAKELPFLCEVCNKSFKDKNRLGQHMKFHSKNRPHMCDICGKKFVQVCGLKTHLLIHSDEKNYQCNICQKRFKTQVSNDTYEVNPSNIVKENGNVKAEYPIVPEDKAESVHNEQCNNDEEECSSESEDEDSQTIEENYSQSIENTSKRKSNLRSKLFPASIDHSSYIIDKKNSIYLCKTCNKHFANNYSLKAHLLRHTGNKPFSCNICNKKTFTYADLKSHMLVHDNNLPFSCSICQKSFRNETRLETHMLCHKENRPHMCEICGKSYVRDCNLRVHLLSHSDEKKYQCNICQKKFKMCSSLKTHMDRHMKRTYKCKICDKVYKSTGGYYFHLRTHNEKNIKCNLCDKTFYFKSKLKMHMKSHTNEVSVTCPICKKQFTTNSVLKHHLLVHTGERPYVCKVCNKTFRQSGTLSVHMKLHTGVRPYKCQLCEKGFIKSHHYYNHMKRQHSSAASMMKILHSGFLRILLSSDGTTNHPLNLSSSPKRLQHFQQGSTSADLEEYPSMFNFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -