Basic Information

Insect: Poecilus cupreus
Gene Symbol: -
Assembly: GCA_963942605.1
Location: OZ012729.1:12394763-12400515[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.049 9.3 8.5 0.3 2 23 189 211 189 211 0.93

2 14 1.6 3.1e+02 3.7 0.2 6 23 219 236 217 236 0.93

3 14 2.2e-07 4.1e-05 25.3 3.1 1 23 242 264 242 264 0.99

4 14 0.00045 0.086 14.9 3.0 1 23 270 292 270 292 0.98

5 14 5.8e-08 1.1e-05 27.1 1.1 1 23 298 320 298 320 0.98

6 14 5.1e-05 0.0097 17.9 0.8 1 22 326 347 326 350 0.90

7 14 8.5e-08 1.6e-05 26.6 0.7 3 23 411 431 410 431 0.99

8 14 9.2e-07 0.00018 23.4 1.2 1 23 437 459 437 459 0.99

9 14 2.2e-06 0.00043 22.1 1.8 1 23 465 487 465 487 0.97

10 14 1.3e-05 0.0024 19.8 2.8 2 23 493 514 493 514 0.98

11 14 1.5e-06 0.00028 22.7 0.6 1 23 520 542 520 542 0.96

12 14 5.4e-07 0.0001 24.1 2.7 1 23 548 570 548 570 0.99

13 14 1.5e-05 0.0028 19.6 3.1 1 23 576 598 576 598 0.98

14 14 7.9e-05 0.015 17.3 1.2 1 23 609 632 609 632 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.049	9.3	8.5	0.3	2	23	189	211	189	211	0.93
2	14	1.6	3.1e+02	3.7	0.2	6	23	219	236	217	236	0.93
3	14	2.2e-07	4.1e-05	25.3	3.1	1	23	242	264	242	264	0.99
4	14	0.00045	0.086	14.9	3.0	1	23	270	292	270	292	0.98
5	14	5.8e-08	1.1e-05	27.1	1.1	1	23	298	320	298	320	0.98
6	14	5.1e-05	0.0097	17.9	0.8	1	22	326	347	326	350	0.90
7	14	8.5e-08	1.6e-05	26.6	0.7	3	23	411	431	410	431	0.99
8	14	9.2e-07	0.00018	23.4	1.2	1	23	437	459	437	459	0.99
9	14	2.2e-06	0.00043	22.1	1.8	1	23	465	487	465	487	0.97
10	14	1.3e-05	0.0024	19.8	2.8	2	23	493	514	493	514	0.98
11	14	1.5e-06	0.00028	22.7	0.6	1	23	520	542	520	542	0.96
12	14	5.4e-07	0.0001	24.1	2.7	1	23	548	570	548	570	0.99
13	14	1.5e-05	0.0028	19.6	3.1	1	23	576	598	576	598	0.98
14	14	7.9e-05	0.015	17.3	1.2	1	23	609	632	609	632	0.96

Sequence Information

Coding Sequence: atgaataattcaaatttaatagatttaGGTTTAGGAAAAGTGTGTAGAGCGTGTTTGTCCGATGAAGGAGAAATGAAATCGGTATTTGGTAGTAGTCTTGAAAGCCCAGAAATacagatatttaaaatgtttgaatGTTGTGCTTCTTTAGAGatAAGTGAAAATGATGGTCTGCCAGCTGTGATTTGTATTCAATGCGAATTGAGGTTAAATAGCGCATATTATTTCCGTGAATTGTGCCAAAGGTCCAACATTACTTTAAGAAAATACATCGAAAATGCAATGCGTTACAGTGTCAAACAAGAAACTGCAGCAGAAGACAAATATTTGATTGAAGAGAACAGTGAATCAGTCAAAACAGAAACTGTTGGCGAAATACTTGACAACATAGTGGAAGAAACTGAAAAATCAGATAATGATGAACTAGTGGACGAAGATAGTAATGATTCGGATGACAAACCGTTGATATCTAGAAAGGAATCTAAAACCAAATGTACTCAATTTGCAGAAGAATTAGTTAATCAAGCAATACTTGAAACCAAGAAGAAATACAGCGAGAAACGGGAGTGTACAGTTTGTGGATTTATTTCGTCCAATTCAAGAGGACTTTCGTTGCATATTGCTCATCTACATAAAGACTTAAAAGAAAGGTGGTGTAACACTTGTTTTGAAGAAGTGGATGACCTAGCTACTCATTCAAAAGAACATAACAAAGTCAGATCATATTCTTGTACATTTTGCGAAAAGTCTTTTTCATCGCAAGGACACTTAACAGAACATATTCGTACCCATTCCatggAACGTCCCTTCAAATGTAAAGAATGCAGTAAAGGATTTTTGTCCTCACGCCATTTAAAAGTTCACGAAAGAATTCATTCGGGCGAAAAGCCTTTTTCTTGTCCACATTGTGGTCGAGGTTTCACTCAaaaaggttcgcttcaagggcaCATTAGGACTCATACCGGGTTCAAACCGTTCAGATGTGAGATTTGTGGGAAACAATGTACAACATCCAGCGCGTTGGCTTTACATCGAGCTAAAACTGGACACAATTCTTATACGAAGCTAGAAACTCCGGAAATTGAACAAGAACAGGTCGTTGTTGAGCAGTTTGAAACAACTGGTGATGAAAACCTGGATGGCGAAAATTCCATCAAAATTGAAATCAGCTCCCAGCAATCTTCAACAGACCTCGCGCCAACCACCTCCAAAGACACAACTCGAAAGCTTTGCACCGTATGCGGGAAGACCTTCTCCACAGCCAGCAAGCTGCGGCTCCACATGCGGGTGCACACCGGGGAGACGCCGTACAAGTGTCAGTATTGCGCGAAGAGGTTCTCCACGCGAGGCCAGCTCGTGGTGCACGTCCGCACGCACACGGGTGAGCGGCCCCACGTGTGTCATGTCTGCGGGAAGGGCTTCGCTCAGTCTAGTGTGCTTAACACACACATGAAGTTGCATACTGGGCGGCCGGAGCAGTGCCAGGTGTGCCAACAGAGGTTTTGTAGGCCTGCGGAACTCAGGCTGCATATGAGGAAGCATACAGgtGAAAAACCCTATCTGTGTACCGAATGCGGGCAAGCCTTTATCCAGCGCTCGCACCTCATGGAGCACATAAAAATCCACAGCGACGAGCGTCCATACAAATGTCACCTCTGCGAACGTGCCTTCAAGCAGAGCAGTTCTCTCAAGTCCCACATTCAGATCCACACTGGGTACAAACCCTACAAGTGTTCGCAGTGCCCTTACGCCTGTCGCCAGCCCTACAGTCTCACGCAGCACATGAAGCAACACAGCGCGGACTCGCCTCAGGCGCACCGCCCCCATGTTTGCCTCGTGTGTCAGAAGTCGTTCACTACCCTAGCGATGCTTACGTCTCATTCGAGGAGCGTGCATCAGGCCATATTTTAA
Protein Sequence: MNNSNLIDLGLGKVCRACLSDEGEMKSVFGSSLESPEIQIFKMFECCASLEISENDGLPAVICIQCELRLNSAYYFRELCQRSNITLRKYIENAMRYSVKQETAAEDKYLIEENSESVKTETVGEILDNIVEETEKSDNDELVDEDSNDSDDKPLISRKESKTKCTQFAEELVNQAILETKKKYSEKRECTVCGFISSNSRGLSLHIAHLHKDLKERWCNTCFEEVDDLATHSKEHNKVRSYSCTFCEKSFSSQGHLTEHIRTHSMERPFKCKECSKGFLSSRHLKVHERIHSGEKPFSCPHCGRGFTQKGSLQGHIRTHTGFKPFRCEICGKQCTTSSALALHRAKTGHNSYTKLETPEIEQEQVVVEQFETTGDENLDGENSIKIEISSQQSSTDLAPTTSKDTTRKLCTVCGKTFSTASKLRLHMRVHTGETPYKCQYCAKRFSTRGQLVVHVRTHTGERPHVCHVCGKGFAQSSVLNTHMKLHTGRPEQCQVCQQRFCRPAELRLHMRKHTGEKPYLCTECGQAFIQRSHLMEHIKIHSDERPYKCHLCERAFKQSSSLKSHIQIHTGYKPYKCSQCPYACRQPYSLTQHMKQHSADSPQAHRPHVCLVCQKSFTTLAMLTSHSRSVHQAIF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00769008;
90% Identity: iTF_01275574;
80% Identity: -