Basic Information

Insect: Poecilus cupreus
Gene Symbol: -
Assembly: GCA_963942605.1
Location: OZ012718.1:19206613-19209282[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 1.6e-05 0.0031 19.4 1.5 1 23 323 345 323 345 0.97

2 17 0.0093 1.8 10.8 3.3 1 20 351 370 351 373 0.93

3 17 1.2e-05 0.0022 19.9 0.5 1 23 379 401 379 401 0.99

4 17 2.4e-05 0.0046 18.9 3.5 1 21 407 427 407 429 0.94

5 17 2.5e-05 0.0048 18.8 4.6 1 23 435 457 435 457 0.99

6 17 2.4e-05 0.0046 18.9 5.3 1 23 463 485 463 485 0.97

7 17 1.9e-05 0.0037 19.2 8.1 1 23 491 513 491 513 0.97

8 17 9.4e-08 1.8e-05 26.5 2.7 1 23 519 541 519 541 0.98

9 17 6.9e-05 0.013 17.5 6.7 1 23 547 569 547 569 0.97

10 17 1.2e-05 0.0022 19.9 6.9 1 23 575 597 575 597 0.98

11 17 6.3e-06 0.0012 20.7 7.9 1 23 627 649 627 649 0.98

12 17 2.7e-05 0.0051 18.8 9.1 1 23 655 677 655 677 0.98

13 17 1.6e-05 0.0031 19.4 7.7 1 23 683 705 683 705 0.98

14 17 0.00099 0.19 13.8 8.8 1 21 711 731 711 733 0.94

15 17 7.7e-05 0.015 17.3 0.5 1 23 739 761 739 761 0.97

16 17 0.031 5.8 9.1 4.5 1 23 771 793 771 793 0.98

17 17 6.6e-07 0.00013 23.8 0.9 1 23 799 821 799 821 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	1.6e-05	0.0031	19.4	1.5	1	23	323	345	323	345	0.97
2	17	0.0093	1.8	10.8	3.3	1	20	351	370	351	373	0.93
3	17	1.2e-05	0.0022	19.9	0.5	1	23	379	401	379	401	0.99
4	17	2.4e-05	0.0046	18.9	3.5	1	21	407	427	407	429	0.94
5	17	2.5e-05	0.0048	18.8	4.6	1	23	435	457	435	457	0.99
6	17	2.4e-05	0.0046	18.9	5.3	1	23	463	485	463	485	0.97
7	17	1.9e-05	0.0037	19.2	8.1	1	23	491	513	491	513	0.97
8	17	9.4e-08	1.8e-05	26.5	2.7	1	23	519	541	519	541	0.98
9	17	6.9e-05	0.013	17.5	6.7	1	23	547	569	547	569	0.97
10	17	1.2e-05	0.0022	19.9	6.9	1	23	575	597	575	597	0.98
11	17	6.3e-06	0.0012	20.7	7.9	1	23	627	649	627	649	0.98
12	17	2.7e-05	0.0051	18.8	9.1	1	23	655	677	655	677	0.98
13	17	1.6e-05	0.0031	19.4	7.7	1	23	683	705	683	705	0.98
14	17	0.00099	0.19	13.8	8.8	1	21	711	731	711	733	0.94
15	17	7.7e-05	0.015	17.3	0.5	1	23	739	761	739	761	0.97
16	17	0.031	5.8	9.1	4.5	1	23	771	793	771	793	0.98
17	17	6.6e-07	0.00013	23.8	0.9	1	23	799	821	799	821	0.96

Sequence Information

Coding Sequence: ATGAATGTAAAAAGAgccttaaaaattattaaatgtatattaattACTAAGGAATACTATAATTTGCAACAAGCAGAATCAGCGAATCAGAACCAACAACAGATGAACAGTCACGGGCAGCAACAACAGCAGCTCAACTCGCAACCGCCACCTGGACATTCCGCAAACACCGGACAAAACATGGTCCAAGTCCAAGTGCAGGACGGTAACATGGTATCCGTCATCGACGATACCAAGGATCAGATTCAGAAATCTGAGATGCTCGGAAACCAGCAGCAGCAACAATGTAACCAGCAAGAACAAATGCAACAACAAATGCCTGGACCCGACAACCAACAGATGGCGCAACAACAGAACCTCACAGTGCAGCAGCTACAACATCTTCAAGTGCAGCAGGTCATCGACAACGTCGTGCGGATGGAAAGCTCGGTGGAAAATAATCAGGAAGGCAACCAGAATGATGGAACTATGCCGGATAACTTGCAAATAGTGAAAGACGAGAAAGGCATTCAGAATTGTGCGAAATTATTATCTTCGGCGCAGTTTGGTTTACAAGATATTAAGGGGAATTTTACGATGCCGGACATCAAGACTGGTCATCATATGATGGATGTGCGAACAGCGGACGGTAGTATAGTGAAGATATCGGCTGGTATTCAAGAACAGGACTTGGCTAAAACGTTGGGTGTGGAAATGGTTCAAAACATGTACAAAGTGAATGTGGACGATATAAACCAACTGTTAGCGTATCACGAAGTGTTTGGCAAGCTGCAGAACGAGATGGTGGCGGGAGTGGGGGGCCAGCAGGGCGCTGTAGGAGCGACGGGCGCCCCCAACAATGCGAGCGCGGGAGTCGTCACTAACGCTAGCATCGCCAACATGAACAAGTCGCTGGAGAGCGACCAGGAGCCGTCCACGTCGTCCATCTCGGCGGACAGTCCGCCAGCCGTGATAGCAGCGGGCACGCATGTGTGCGACCTGTGCGGCAAGATGTTCCCGTTCCGCTACCAGCTGATCGTGCACCGGCGCTACCACACGGAGCGCAAGCCCTTCACGTGCCAGGTGTGCGGCAAGGCGTTCACATGCGCCGCCGAGCTCACGCGCCATGGCAAGTGCCACCTAGGCGGCTCCATGTACACCTGCGCCGTTTGCTTCCATGTGTTCGCCGACGCCGCGTCGCTCGAGCGTCACATGAAGCGCCACTCCACGGACAAACCGTACGCCTGTAATATTTGCGGCAAGTCGTTCGCTCGCAAAGAGCACCTGGACAACCATACGCGGTGTCACACGGGGGAAACGCCGTACCGGTGTCAGTACTGCGCGAAAACCTTCACCCGTAAAGAGCACATGGTGAACCATGTGCGCAAACACACTGGCGAGACCCCGCACAGATGTGAGATTTGCAAAAAGTCGTTCACACGTAAGGAGCATTTCATGAACCATGTTATGTGGCATACAGGTGAGACTCCGCACCACTGTACGACGTGCGGTAAGAAGTACACGCGCAAGGAGCACCTGGCGAACCACATGCGCTCGCACACCAACGACACGCCATTCCGCTGCGAGATCTGCGGCAAGTCGTTCACGCGGAAAGAACACTTTACGAATCACATCATGTGGCACACGGGCGAAACGCCGCACCGTTGCGACTTCTGTTCGAAGACATTCACGCGGAAGGAACATCTGCTGAACCACGTTCGCCAGCACACTGGCGAGTCGCCGCACCGCTGCACCTTCTGCTCCAAGTCGTTCACCCGCAAAGAGCACCTCATCAACCACATCCGGCAGCACACGGGCGAGACGCCCTTCCGCTGCAGCTACTGTCCCCGCAAGGACCACCTGGTGAACCACGTGCGCCAGCACACCGGTGAGTCCCCACACAAGTGCACGTATTGCACGAAATCCTTCACCCGCAAAGAACACCTAACGAATCATGTTCGCCAACACACAGGCGAATCTCCGCATCGGTGTCACTTCTGCTCCAAGTCGTTCACCCGCAAGGAGCACCTCACGAACCACGTGCGCATTCACACCGGAGAATCGCCGCACCGCTGCGAATTCTGCCAGAAGACATTCACCCGCAAGGAGCACCTCACCAACCACTTGCGCCAGCACACGGGCGAGACGCCGCACTGCTGCAACGTGTGCTCCAAGCCGTTCACGCGCAAGGAGCACCTGATCAACCATATGCGCTGCCACACGGGCGAGCGGCCCTTTGCGTGCACCGAGTGCGGCAAGTCGTTCCCGCTCAAGGGCAACCTGCTGTTCCACCAGCGCTCGCATAACAAGGGCTCGAACGCCGAGCGGCCGTTCCGCTGCGACTTGTGTCCCAAGGACTTCATGTGCAAGGGGCACCTGGTGTCGCACCGACGCTCGCACAGCGGTGAGCGGCCGCATGCATGCCCTGACTGCGGCAAAACCTTCGTAGAGAAAGGCAACATGCTGCGGCATCTGCGTAAACATACGAGCGACTCGGCGCAGCAGGCGGCGGTGGCCGTGTCCGTGGCGCAGCCCTCCACGTCCAACATTCAGATCCCGCAGATCAGCCAGGCACAGGCGCAAGCCCAGGCGATGCCGCCGCCTATGCCGCAGCATCTGCCGCTGCACCAGCAGCCCGCGCACCCCGTCGTCGTGCCCACGGCCAACGGCAATGTACTCGCCTCGTACTAA
Protein Sequence: MNVKRALKIIKCILITKEYYNLQQAESANQNQQQMNSHGQQQQQLNSQPPPGHSANTGQNMVQVQVQDGNMVSVIDDTKDQIQKSEMLGNQQQQQCNQQEQMQQQMPGPDNQQMAQQQNLTVQQLQHLQVQQVIDNVVRMESSVENNQEGNQNDGTMPDNLQIVKDEKGIQNCAKLLSSAQFGLQDIKGNFTMPDIKTGHHMMDVRTADGSIVKISAGIQEQDLAKTLGVEMVQNMYKVNVDDINQLLAYHEVFGKLQNEMVAGVGGQQGAVGATGAPNNASAGVVTNASIANMNKSLESDQEPSTSSISADSPPAVIAAGTHVCDLCGKMFPFRYQLIVHRRYHTERKPFTCQVCGKAFTCAAELTRHGKCHLGGSMYTCAVCFHVFADAASLERHMKRHSTDKPYACNICGKSFARKEHLDNHTRCHTGETPYRCQYCAKTFTRKEHMVNHVRKHTGETPHRCEICKKSFTRKEHFMNHVMWHTGETPHHCTTCGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCTFCSKSFTRKEHLINHIRQHTGETPFRCSYCPRKDHLVNHVRQHTGESPHKCTYCTKSFTRKEHLTNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCQKTFTRKEHLTNHLRQHTGETPHCCNVCSKPFTRKEHLINHMRCHTGERPFACTECGKSFPLKGNLLFHQRSHNKGSNAERPFRCDLCPKDFMCKGHLVSHRRSHSGERPHACPDCGKTFVEKGNMLRHLRKHTSDSAQQAAVAVSVAQPSTSNIQIPQISQAQAQAQAMPPPMPQHLPLHQQPAHPVVVPTANGNVLASY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00903477;
90% Identity: iTF_01226018;
80% Identity: iTF_01226018;