Pcup020306.1
Basic Information
- Insect
- Poecilus cupreus
- Gene Symbol
- Zbtb9
- Assembly
- GCA_963942605.1
- Location
- OZ012718.1:12133419-12142622[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.00073 0.14 14.2 4.3 2 23 19 40 18 41 0.93 2 23 0.058 11 8.3 1.9 1 23 45 68 45 68 0.91 3 23 3.7e-05 0.0071 18.3 2.5 3 23 93 114 92 114 0.94 4 23 0.03 5.8 9.1 1.3 1 23 118 141 118 141 0.87 5 23 2.5e-05 0.0048 18.8 0.9 1 23 160 182 160 182 0.98 6 23 0.051 9.8 8.4 0.5 2 23 188 210 187 210 0.95 7 23 0.0028 0.53 12.4 1.0 3 23 236 257 235 257 0.96 8 23 0.0011 0.2 13.7 2.0 2 23 263 284 262 284 0.92 9 23 0.41 79 5.6 0.8 2 12 290 300 289 309 0.73 10 23 0.00088 0.17 14.0 3.5 1 23 315 338 315 338 0.90 11 23 0.00044 0.084 14.9 3.3 2 23 344 365 343 365 0.97 12 23 0.011 2.1 10.5 1.2 1 23 372 395 372 395 0.98 13 23 4.6e-05 0.0087 18.0 0.6 2 23 402 423 401 423 0.97 14 23 1.1e-05 0.0021 19.9 4.5 1 23 429 451 429 451 0.97 15 23 1.5e-07 2.9e-05 25.8 4.2 1 23 457 479 457 479 0.98 16 23 0.00099 0.19 13.8 2.0 1 23 485 508 485 508 0.96 17 23 0.0003 0.056 15.5 1.2 1 23 517 540 517 540 0.91 18 23 2.1e-06 0.00039 22.3 0.3 1 23 545 567 545 567 0.98 19 23 1.1e-06 0.00021 23.1 1.0 1 23 576 599 576 599 0.97 20 23 0.0022 0.41 12.8 0.2 1 23 606 628 606 628 0.94 21 23 1.2e-07 2.4e-05 26.1 4.8 1 23 634 656 634 656 0.99 22 23 3.6e-06 0.00069 21.5 0.2 1 23 662 684 662 684 0.97 23 23 4.1e-05 0.0077 18.2 0.4 1 23 690 712 690 712 0.98
Sequence Information
- Coding Sequence
- ATGTATTCGAAGAGCATAAAGAAAATAGCTGCAGAAGAAAAAGAGATTAATCTCATCTGTCCAAACTGCAACTTACATTTCAAGACCAGGAAACAACTTTATCAACATATGGATTATCACCACAAACCTAAACATGCATGTCAAGTATGCGGAAAACTATTCCGGTTCAAAGCCGACGCCAGTCATCATTACAGCTTAGTGCATTTGAAAACAATTACGATATATTCGAAGAGCATAAAGAAAATAGGCGCAGAAGAAAAAGAGATTAATCCCATCTGTCCAGACTGCAACTTACATTTCAAGACCAAAAAACAACTTCGTACACATATGGATTATTACCACAAACCTAAACATGCATGTCCAGAATGCGGAAAGTTATTTCGGGTCAAAGCTTTTGCCATTCATCATTACCAGTTTGTTCATTTGAAAACAATTACGATTGCATTCGAATGGGTTCCAGTCAAACAAGAGCACCAATACATCTGCAGTACCTGCGGATTCGCTTTCGAAAATGAGAGTAAATACAATCGACATCAGAAAGTCCACAATACAGAAACAGTTCCTTGTTCATTTTGTAACAAAGTCTTCCTTAATTCTAGGCGCCTCGACATGCatataaagaaaatacataaatcaaGTAAAAGGAGTACCAGTCAACAACAGACGCAAGATCCGTTGCAAATCGATTCCAAGACAAATAAGTTCTGTTCATTTTGCAATCGAGACTTCCCTACTCGTCAAAAGTACATGGTACATATGCGAGCACTTCATAGTCCAAAGATCTTGTCATGCAAGTACTGTGGAAAGAAGTTCAACTTACGATCCCAAATGAGACTGCATGAAAGTTTCCACGAAAGAGTCCATGTTACTtgtgaaatatgtaataaaaaatttggaaatgtgGATCAACATAAACGACGTCGACATGCTAAAATATATTCGCACCACTGCGATAAATGCGAAAAAGTTTATAAAACGGAGGATGAGTTGAAGAAACACAAAGATGAATTACATAGTGGTAAACTCCTGGAATGTGAACgttgtgataagaaatttacCCATATAATGTACTTAAAAATGCACCAAAAGTCACATGCATCTGATAAAAAGGAGTATAAATGCAGTGAATGTATTGAAGTTTTCCGGgagataaaaaattttcatattcatatgAATATTAACCATGGAATTACAACATCAACAACTTGTGACATTTGTAACAAAGTATTGTCATCAGCTTCTAGTTTACGGGACCATAAGATGAGGCACTTTGGTAAAAAGCCACATTCTTGTGAAGTTTGTAATAAACGTTTTGTTACTAAAAAGCACGTAAGAGTTCATATGCGCATTCATACTGGCGAGAGGCCATTTAAATGCCCTGACTGTGGAAAATCTTTCACTCAGCGTTATTGCTTAAAAATTCATCGAAGATTACATACTGGAGAACGCCCATACAAATGCAAAGATTGCGACAAAACTTTTCTTTCAAGAAGTGCTCAAAAAGTGCACGAGAAAAGGAATCACGATGCAGCGTTGAAACAATTTTCCCATCATTGCGATGAGTGTGGCAAAGGCTTTTCTGGTCCTGCTAAATTATCACATCATATAGATGCAGACCATCTTGGAATTCGTTATCCGTGtgatatttgtgataaagaattTCGAAGTGCGTATTATCTCAGTCTGCATGTGAAGACTCATGATGACAATTATAAACCCCGTGAGTTCAGTTGTACGCAGTGTGAGAAAGTCTTCGAAACAAACAGATCTTTAAAAAGACATATCCTCACCGTACATGAGAACGCTCCACCTGCTTTCATGTGTGACATATGTGGCAAAAGAGTAGGATCTGCAAGGAGTCTGAAAGAGCATTCATTTATTCACACTGGTTTCAAACCTTATAAATGTACCTACTGTGAAAAAAGCTTCAATAAACAGCATAATTTGACTGTGCATATTCGTACGCATACTCAGGAAAGGCCTTATGCGTGTGAAGAATGTGGAAAAGCCTTTACTCAAATTGGTACACTAAAACTGCATCGAAGATTACATTCTGGAGAACGACCTTTTAGTTGTGAATTCTGCGCCAGAAGTTTTGTTTCTAAAAGCGCTCTTAAATTGCATATAGGAACCCATGGCACCCCGTTGCctcggaaaatataa
- Protein Sequence
- MYSKSIKKIAAEEKEINLICPNCNLHFKTRKQLYQHMDYHHKPKHACQVCGKLFRFKADASHHYSLVHLKTITIYSKSIKKIGAEEKEINPICPDCNLHFKTKKQLRTHMDYYHKPKHACPECGKLFRVKAFAIHHYQFVHLKTITIAFEWVPVKQEHQYICSTCGFAFENESKYNRHQKVHNTETVPCSFCNKVFLNSRRLDMHIKKIHKSSKRSTSQQQTQDPLQIDSKTNKFCSFCNRDFPTRQKYMVHMRALHSPKILSCKYCGKKFNLRSQMRLHESFHERVHVTCEICNKKFGNVDQHKRRRHAKIYSHHCDKCEKVYKTEDELKKHKDELHSGKLLECERCDKKFTHIMYLKMHQKSHASDKKEYKCSECIEVFREIKNFHIHMNINHGITTSTTCDICNKVLSSASSLRDHKMRHFGKKPHSCEVCNKRFVTKKHVRVHMRIHTGERPFKCPDCGKSFTQRYCLKIHRRLHTGERPYKCKDCDKTFLSRSAQKVHEKRNHDAALKQFSHHCDECGKGFSGPAKLSHHIDADHLGIRYPCDICDKEFRSAYYLSLHVKTHDDNYKPREFSCTQCEKVFETNRSLKRHILTVHENAPPAFMCDICGKRVGSARSLKEHSFIHTGFKPYKCTYCEKSFNKQHNLTVHIRTHTQERPYACEECGKAFTQIGTLKLHRRLHSGERPFSCEFCARSFVSKSALKLHIGTHGTPLPRKI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -