Pcup020305.1
Basic Information
- Insect
- Poecilus cupreus
- Gene Symbol
- -
- Assembly
- GCA_963942605.1
- Location
- OZ012718.1:12122976-12132000[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 1.7e-05 0.0033 19.3 0.4 1 23 24 46 24 46 0.98 2 22 4.7e-07 8.9e-05 24.3 3.2 1 23 52 74 52 74 0.98 3 22 0.017 3.3 9.9 2.2 1 23 80 103 80 103 0.95 4 22 0.00075 0.14 14.2 2.5 3 23 151 171 150 171 0.98 5 22 0.0021 0.4 12.8 1.4 1 23 176 198 176 198 0.93 6 22 2.4e-05 0.0045 18.9 0.3 2 23 205 227 204 227 0.95 7 22 0.00027 0.051 15.6 1.4 3 23 235 256 233 256 0.95 8 22 2.9e-06 0.00055 21.8 1.8 1 23 261 283 261 283 0.98 9 22 8.7e-06 0.0017 20.3 1.6 1 23 292 315 292 315 0.98 10 22 3e-05 0.0057 18.6 0.4 1 23 323 345 323 345 0.98 11 22 4.3e-07 8.2e-05 24.4 0.9 1 23 351 373 351 373 0.99 12 22 2.9e-06 0.00056 21.8 0.8 1 21 379 399 379 399 0.97 13 22 0.091 17 7.6 5.6 1 23 426 448 426 448 0.98 14 22 0.0024 0.47 12.6 1.1 1 23 453 475 453 475 0.96 15 22 4.9e-05 0.0093 17.9 0.9 1 23 483 505 483 505 0.96 16 22 0.00077 0.15 14.2 2.5 1 23 511 534 511 534 0.95 17 22 7.6e-06 0.0015 20.5 4.5 1 23 539 561 539 561 0.98 18 22 0.00025 0.048 15.7 3.2 1 23 570 593 570 593 0.96 19 22 0.00039 0.075 15.1 3.1 1 23 601 623 601 623 0.98 20 22 7e-07 0.00013 23.7 0.7 1 23 629 651 629 651 0.98 21 22 1.2e-05 0.0023 19.8 2.7 1 23 657 679 657 679 0.98 22 22 3.9e-05 0.0074 18.2 1.5 1 23 685 707 685 708 0.96
Sequence Information
- Coding Sequence
- ATGTGCGGTAAAGTACTGCTAACTTCAAGTTACAGAGATCATATTCACAGACATTTGGGTGTAAAACCTTATGTTTGTGAATCATGCGGAAAGCCTTTCGTAAATACCAGACTTTTAAAACTTCATTTACGCCAACATACTGGAGAAAAGCCATTTACTTGTCCGTTTTGCGACAAGTGTTTTGCAAATAGTAGTGCATTGAAAATACATAAAAGAAGACATACTGGCGAGAAGCCCTACCCTTGTAACTTGTGTGACAAAAGATTTGTTTGTAGAACTGCTCTCTTAGCTCATGCTCACACTAATCATAAACTTATAACACAAATTGATCCCAAGAAACATCCATTGAAAACTTATGAGACTTTGAAGATCGGAATACAATGGTATCAAGATCCATTGAAAGTTGAACCTGTGTCGAGTGAGACTGAATCTATGCCATTGAACAAATTCTGCTCGATATGTAGTAAAGAGTTTGCTACTCGGCGTTTGTATACACGCCACAATCGAAGGCATAAACCGAAGCTTCATGCATGCAAAATTTGTGGAAGGAAATTACGTTATTTGTACCAGTTAAAAATTCACGAATCTCTCCATGGACCTAGTCTTGAAATACCCTGCGATTTGTGTGGCAAAACATATGCTACAAAGGAACTTCTAAATTCACACAAAAAACGTATTCATAACAGAGAATTCTCTCTTTTTTGTGAAGACTGTGGAAGAGGATTCTTCTTTCTTTCCGAATTAACTCATCATAGAAACGTGCAACATCTTGGAAAACGATTTCCTTGTACTATGTGCGATAAATCGTACAGGACACGGGATTATCTCAGTGCTCATAAGAAAACACATTCGTCTGATTATGTCAAAGAGCAATTTAAATGTGAACAATGTGATAAAGTTTATGAAACGCTTAAAAGTTATAAAAGACACATCAAATCAATTCATGAAAAAGTACCGATAGATATCTACATGTGCGATATATGTGGTAAAAAACTAACGTCAGCAAATAGTTTACGTGATCATAAGATGATGCATGCAGGTGACAAACCTTACAAATGCCCTACTTGTGAAAAAGGATTCAACACTCAGAAATATCTTACCGTTCATTTGCGTGtacatacaaaagaaaaaccATATGTGTGCGACGAATGTGGCAAATGTTTCACTCAACCTAGTCCTTTGAAACTTCATCGAAGGCCTTCCAACGAGCGCGAGATTGAAGAATCAATATTACTCAGCCCCGAAGTAACCATAACAGAACATCCAGAAGGCAAATACATATGTTTTGTTTGCTGCAGAGAGTTCAGCAATCGAGAGAAGTTCACAAAACATAATCGAACACATAAACAAAGGACCTACCCCTGCACTTCATGTGACAAAAAATTTCGGTTTCCTTTCGAAGTGAAGATACACGAAACTCGACATGAAGGTTCCCCAAACGCCGAGTATTTATGCGATCTTTGCAGTAAAAATTTCGCAAATTCTTCTAGCCTTGCTTTACATAAACGCAGACATGCAAAagatttttcatttcattgcgATCACTGTGAAAAAGGATTTTACAGCAACGCTGATTATAAAGCACACCGGGATGTGGAACACAGGGGTGTAAGATATTCCTGCAATATTTGCAAAAAGCAATTTAAACACTCTTACAATTACaatgaacatataaaaatacatgaacCCGATTACATGAAACAAGAACACAAATGTCAGTATTGTGATAAAGTATATCAAGTAGAAAAAAATCTGCAAAAACATGTTAAACAAACACATGAAAATGTACCAGGAAATTTATATGTTTGCGATACTTGTGGTAAAACTCTTTCGAGCCATACGAGTTTTATGAATCACAAAAGATTACACACTGGAGAGAAGCCGTACGTGTGTCAAACATGTGGAAAAAGATTCAGTAGCACTGGAGGTTTAACCACACATCAAAGGATTCATAATGATTATAGGCCTTATGAGTGCCATTTTTGTGCTAAGAAATTCACGCAAAGAAGTTCTCTAGTAGTTCACTTGCGACTGCACACGGGCGAAAGACCGTATCCTTGTGAAATTTGTTCGAAAAAATTTGTTACTCTCACTCTTATGAAGAGCCACATCAAAATTCATCACGGCAATCCCATTAATTCATAA
- Protein Sequence
- MCGKVLLTSSYRDHIHRHLGVKPYVCESCGKPFVNTRLLKLHLRQHTGEKPFTCPFCDKCFANSSALKIHKRRHTGEKPYPCNLCDKRFVCRTALLAHAHTNHKLITQIDPKKHPLKTYETLKIGIQWYQDPLKVEPVSSETESMPLNKFCSICSKEFATRRLYTRHNRRHKPKLHACKICGRKLRYLYQLKIHESLHGPSLEIPCDLCGKTYATKELLNSHKKRIHNREFSLFCEDCGRGFFFLSELTHHRNVQHLGKRFPCTMCDKSYRTRDYLSAHKKTHSSDYVKEQFKCEQCDKVYETLKSYKRHIKSIHEKVPIDIYMCDICGKKLTSANSLRDHKMMHAGDKPYKCPTCEKGFNTQKYLTVHLRVHTKEKPYVCDECGKCFTQPSPLKLHRRPSNEREIEESILLSPEVTITEHPEGKYICFVCCREFSNREKFTKHNRTHKQRTYPCTSCDKKFRFPFEVKIHETRHEGSPNAEYLCDLCSKNFANSSSLALHKRRHAKDFSFHCDHCEKGFYSNADYKAHRDVEHRGVRYSCNICKKQFKHSYNYNEHIKIHEPDYMKQEHKCQYCDKVYQVEKNLQKHVKQTHENVPGNLYVCDTCGKTLSSHTSFMNHKRLHTGEKPYVCQTCGKRFSSTGGLTTHQRIHNDYRPYECHFCAKKFTQRSSLVVHLRLHTGERPYPCEICSKKFVTLTLMKSHIKIHHGNPINS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -