Pcup020299.1
Basic Information
- Insect
- Poecilus cupreus
- Gene Symbol
- -
- Assembly
- GCA_963942605.1
- Location
- OZ012718.1:12087373-12091509[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 28 0.026 4.9 9.4 0.1 2 23 102 123 101 123 0.94 2 28 0.0016 0.31 13.1 0.9 1 23 142 164 142 164 0.98 3 28 1.6e-06 0.0003 22.6 1.5 1 23 169 191 169 191 0.97 4 28 4.2e-05 0.008 18.1 2.8 2 23 198 219 197 219 0.97 5 28 0.0097 1.8 10.7 1.2 1 23 225 247 225 247 0.96 6 28 7.9e-05 0.015 17.3 0.9 1 23 253 276 253 276 0.97 7 28 0.0015 0.28 13.3 2.8 2 23 288 309 288 309 0.96 8 28 3.3e-05 0.0064 18.5 1.8 3 23 317 337 316 337 0.99 9 28 1.8e-05 0.0034 19.3 2.4 1 23 343 365 343 365 0.98 10 28 5.9e-07 0.00011 24.0 2.1 1 23 371 393 371 393 0.98 11 28 0.019 3.7 9.8 1.2 1 13 515 527 515 529 0.91 12 28 0.00091 0.17 13.9 2.6 1 23 545 568 545 568 0.93 13 28 6.1e-07 0.00012 23.9 3.5 2 23 582 603 581 603 0.97 14 28 0.00085 0.16 14.0 1.4 1 23 609 631 609 631 0.96 15 28 5.6e-06 0.0011 20.9 3.5 1 23 637 659 637 659 0.98 16 28 0.0023 0.43 12.7 0.2 1 23 665 688 665 688 0.97 17 28 2.6 4.9e+02 3.1 0.7 1 16 694 711 694 712 0.82 18 28 0.41 78 5.6 0.0 2 23 798 819 797 819 0.95 19 28 0.23 44 6.4 2.7 1 23 840 862 840 862 0.94 20 28 6.9e-05 0.013 17.5 2.8 1 23 867 889 867 889 0.97 21 28 1.1 2.1e+02 4.2 1.8 2 23 896 917 895 917 0.96 22 28 0.0015 0.28 13.3 0.6 1 23 922 944 922 944 0.95 23 28 1.6e-05 0.003 19.5 2.9 1 23 950 973 950 973 0.97 24 28 0.00012 0.024 16.7 3.7 2 23 985 1006 985 1006 0.97 25 28 0.0001 0.02 16.9 0.5 1 23 1012 1034 1012 1034 0.96 26 28 9.7e-05 0.019 17.0 1.0 1 23 1040 1062 1040 1062 0.98 27 28 5.8e-06 0.0011 20.8 2.6 1 23 1068 1090 1068 1090 0.97 28 28 0.025 4.8 9.4 0.4 1 21 1096 1116 1096 1120 0.85
Sequence Information
- Coding Sequence
- ATGGAACCTATTGTAACGATCGTAGAATTACCAGCTACAACAGATTGGAAATTATCAAGAAGGAAGATAGCAAAAGATGATGATGATAATGATAGTGATTATGAACCCCTGCTTGTTCGTAAAAAAGCAAAATCCAATATGGCGAAACAAAAGAAGACTAAAGTATCTAAAACAGTAAACAGGAAAATAGTACCACGTAAAGCTAAATATGAAGGCTACAAAAATCCATTTGTCTACGACCATTTGAACACAAAAGACGACAAACCAACCCCAGAACGAAAATCGAAATCTAAAACTAAATGGACTTGtttaatttgcaataaaaacTTGAATGGAAAATCAGATTTAATCGATCATTATGCTGCACATAAAGAagataaaatcaaaatagaagATGGCGAGAAGTTAACAGAGAACGAAGTGTACCAATGCGAAGTCTGCCTTAAAGAGTTCACCTCAGAAAAACGCTTCGAAAAACATGCAGAAACACACAATGACAGTCGATTTAATTGTGATTACTGCGAGAAAAGTTTTAAGCGTCCATATGAGTTCGCTGTACATATGCGTTTTCATTCAAAtgatgataaattaaaatgtcatgtTTGTGATTACACTACAACATATAATTCTGCACTGAAAACTCATATTAAAAGACACGAAGCAGAATACAAGTACAAATGCGAACTTTGTGGAAAAGGATTTTTCGTTTATACTTGGTTTGAAGAACATAAAAACTTTCACACGGGTGCTAAACCTTTTAGCTGTGAAATTTGTGGTAAACAGTTTGCTTATACAAGATACTTGAGTGCTCATAAGAGAAGTATGCATCCGGAATCTTATGGCACACAGCCAGTTATCAACGAATGCCAGTTTTGTCAAAAACGTTTTGCACACAAAAAGAGTTTATTATTACATGTGAGAGGACATACAGGAGAAAATACAGTCCTGTGTGACATTTGTGGAAAAAGACTGTCAAGCAACGATCACTTAAAACTACATAGAAGAATTCACACAGGATATAAACCTTACGCATGTACTACATGTGGAAAAGGATTCTCTAAAAAGTGCAATTTAACTCTACACGAAAGAGTACATAGCGGGGAAAAACCTTATGTATGTGATGTCTGCGGAAAGTGTTTCTCACAAAGAAGTACTTTGGTTATTCATACTAGATACCACACTGGGGCCAGACCaGATGATCAAGGCATTCTCGCTATAAATTCAGACAACGAGAAAATTGAAACAGTTGAATGGGAACATGATTACGCTCAAAATACAACTATCGAGGAGTACATTGATGAAACATATTTAGATGAGTCAGTAGAAAATGAACCAGTAGAAAATGAACCGGTAGAAAATACAACAGAAAATGTATTGGTGGACAGGACAGATGTCGTTAATAACATTGTGAATCCGATATCTCAAGATACAACACTTGAAAAACAACAAACTTTAGATTCATTTACGAGCAATGCAATTAAAGATcataagtgctacactattcgCGTGGGTTCGGATGACAAAGAGAAACATAAGTGTGTGTACGCCTGCGATATTTGCGGCAAAAAATTCCGAAACAAGCGTTGCTCGAAAATCTGTCAAAAAACTCCTAAAGATCCATACAGCAAGCACTATTTATGTGAAATTTGTGGTaaaattttcacttatataTCATCATTTATTGCTCACCACAATCACAAACATGCTGAGCAAAATTTATTCTTGCGCCAACAAAGATTATTAGAATGCACAATTTGTCATAAAAGATTCAGTACCAAATGGAATTTAAAAACACACATGCAAAGTCATTTCGACATTTTTCCTTACTTGTGTGAGTTTTGcggtaaaaaatttaagaaatcaGACATCTTCAAGATACATTTAAGAGTGCATACTGGTGTTAAACCATATTGTTGTACTGTATGCTCAAAAAGATTTGCTACAAAAGGAATGCTAAACACTCATATGAGATCCCATACAGGAGAACGGCCGTATGCTTGTGATTTGTGTGATAGGAGATACGCTGGACTGACCGCTCTTCGAATGCATAGAAGATCTTCCCATACTGGAGAAAGACCTTACAAATGTCATCTTTGCCCTACTGAAAGGACATTCTTTACCAAAAAAGCGCTTCGATGTGTCAACAATAACTTTTTTGGACAGCCTGACGCAATTAAGTTTCCATTTCCCGTTTGGAACAATAACAATCAAAAGTCTCCAGAATGTTATGCTGAGAAGTTAACAATAAAAGTAGAACCACTCGACATCAACTGGGATGACGAAGATTTAACTCTCATGGACTTGAAGAATAAGATGGGTCTTGCACCGAAGAGAAAACGAAAACCAAGAAAAGCAAGAACGAATCCAAAAATATATCGTAGTCAAAAACAACCATGTGTTCTTTGCGGAATTATTATACGTGGCAGATCTGCTCTTGTTAACCACTATCTCGTTCACAAAGAAGATAAAATCAAATCTAATTTGGAAATCATCAATAAATTTGGGGATGAAGACTTCTTTCGTTGTTGCGTATGTATGAAAGAATTTGTAACTAAACCACAGTTAGATAAACATAGCGAATATCACGTACAACGTCCTTTTTTCTGCGAAAAgtgcaataaaagtttcaaacaaactCAAAACTTCATACTTCACATGGACTCTCACGGGTCTAATActgaattaaaatgtaactCGTGTGATTTTACCACCAATTTTAAATTAGCTTTTGACAAACATGTAAAAAGTCATGCTCGACAAGAATACAAATGTGATGAATGCGATAAAGTGTTTCCAGCACGTACTTGGTTCTTGGAACACAAGAATTTTCACACTGGAGAACGTCCATTTTCTTGTGAAGAATGTGGGAAGTGCTTTCCTTATAGTCGTTACTTAACAGCACATAAAAAGAGCATGCACCCTCACTGTTTTTTCAAAGAACCGGAACTAAACGAGTGTCGTATTTGTCAGAAAAGATATTCTCATAAAAACAGTTTGAGACTTCATATGAAAGTACATACCGGAGAAAACACCTATTTATGCGACATATGCGGCAAGAGATTGTCAAGTACAGATAAACTCCAATTACATCGTCGCATTCATACTGGTTACAAACCATATGCCTGTACCGTCTGCGAAAAACGATTCACAAAGAAAGATATTCTTACTGATCACCTACGTACTCATTCTGGTGAGAAACCTTTTGCTTGTGAAACTTGCGGAAAGTGTTTCTCGCAACGGTCTCCTCTTACTATTCACCGTAGGTATCATACTGGCGAACGTCCTTACGTTTGTCATCTGTGCAATAAAGGTTTTGTATCTAAAGGGATTCTAGGTATTCACCTCAAACAGGGTAAACACTAA
- Protein Sequence
- MEPIVTIVELPATTDWKLSRRKIAKDDDDNDSDYEPLLVRKKAKSNMAKQKKTKVSKTVNRKIVPRKAKYEGYKNPFVYDHLNTKDDKPTPERKSKSKTKWTCLICNKNLNGKSDLIDHYAAHKEDKIKIEDGEKLTENEVYQCEVCLKEFTSEKRFEKHAETHNDSRFNCDYCEKSFKRPYEFAVHMRFHSNDDKLKCHVCDYTTTYNSALKTHIKRHEAEYKYKCELCGKGFFVYTWFEEHKNFHTGAKPFSCEICGKQFAYTRYLSAHKRSMHPESYGTQPVINECQFCQKRFAHKKSLLLHVRGHTGENTVLCDICGKRLSSNDHLKLHRRIHTGYKPYACTTCGKGFSKKCNLTLHERVHSGEKPYVCDVCGKCFSQRSTLVIHTRYHTGARPDDQGILAINSDNEKIETVEWEHDYAQNTTIEEYIDETYLDESVENEPVENEPVENTTENVLVDRTDVVNNIVNPISQDTTLEKQQTLDSFTSNAIKDHKCYTIRVGSDDKEKHKCVYACDICGKKFRNKRCSKICQKTPKDPYSKHYLCEICGKIFTYISSFIAHHNHKHAEQNLFLRQQRLLECTICHKRFSTKWNLKTHMQSHFDIFPYLCEFCGKKFKKSDIFKIHLRVHTGVKPYCCTVCSKRFATKGMLNTHMRSHTGERPYACDLCDRRYAGLTALRMHRRSSHTGERPYKCHLCPTERTFFTKKALRCVNNNFFGQPDAIKFPFPVWNNNNQKSPECYAEKLTIKVEPLDINWDDEDLTLMDLKNKMGLAPKRKRKPRKARTNPKIYRSQKQPCVLCGIIIRGRSALVNHYLVHKEDKIKSNLEIINKFGDEDFFRCCVCMKEFVTKPQLDKHSEYHVQRPFFCEKCNKSFKQTQNFILHMDSHGSNTELKCNSCDFTTNFKLAFDKHVKSHARQEYKCDECDKVFPARTWFLEHKNFHTGERPFSCEECGKCFPYSRYLTAHKKSMHPHCFFKEPELNECRICQKRYSHKNSLRLHMKVHTGENTYLCDICGKRLSSTDKLQLHRRIHTGYKPYACTVCEKRFTKKDILTDHLRTHSGEKPFACETCGKCFSQRSPLTIHRRYHTGERPYVCHLCNKGFVSKGILGIHLKQGKH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -