Pcup036564.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Poecilus cupreus
Gene Symbol
-
Assembly
GCA_963942605.1
Location
OZ012724.1:1086187-1089729[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 27 2.7 5.1e+02 3.0 4.5 1 13 37 49 37 54 0.79
2 27 0.0016 0.3 13.2 0.5 2 23 222 243 222 243 0.98
3 27 5.5e-07 0.0001 24.1 1.3 1 23 249 271 249 271 0.99
4 27 0.00015 0.028 16.4 3.1 1 23 277 299 277 299 0.96
5 27 0.0027 0.51 12.4 7.1 1 23 305 328 305 328 0.96
6 27 0.0037 0.71 12.0 2.8 1 23 335 357 335 357 0.97
7 27 8.7e-05 0.017 17.1 4.8 1 23 362 384 362 384 0.99
8 27 3.1e-05 0.0059 18.6 0.7 1 23 390 412 390 412 0.99
9 27 0.00036 0.069 15.2 3.9 1 23 419 441 419 441 0.99
10 27 1.1e-05 0.0021 20.0 2.9 2 23 457 478 456 478 0.96
11 27 7.4e-06 0.0014 20.5 1.1 1 23 493 515 493 515 0.99
12 27 0.0013 0.25 13.5 0.1 2 23 521 542 520 542 0.97
13 27 9.7e-05 0.018 17.0 1.9 1 23 548 570 548 570 0.97
14 27 4.8e-05 0.0091 18.0 2.2 1 23 576 598 576 598 0.99
15 27 1.8e-05 0.0035 19.3 0.3 2 23 607 628 606 628 0.97
16 27 1.3e-05 0.0024 19.8 1.5 1 23 634 656 634 656 0.98
17 27 1.7e-05 0.0032 19.4 0.6 1 23 664 687 664 687 0.95
18 27 6.2e-06 0.0012 20.8 2.3 1 23 693 716 693 716 0.94
19 27 0.018 3.5 9.8 0.1 1 23 729 752 729 752 0.94
20 27 0.024 4.6 9.5 0.5 2 23 761 783 760 783 0.94
21 27 3e-07 5.6e-05 24.9 1.2 1 23 791 813 791 813 0.98
22 27 1.5e-05 0.0028 19.6 1.4 1 23 819 841 819 841 0.97
23 27 0.0069 1.3 11.2 3.8 2 23 853 875 852 875 0.96
24 27 0.00097 0.19 13.8 1.4 2 23 880 902 879 902 0.91
25 27 0.00055 0.1 14.6 0.4 1 19 908 926 908 928 0.96
26 27 0.00018 0.035 16.1 0.7 2 23 934 956 933 956 0.96
27 27 2.7e-05 0.0051 18.7 0.5 2 23 965 986 964 986 0.96

Sequence Information

Coding Sequence
ATGTGCTTAAGTGATACAAATGTTTTTCGAAAAGATACTGTTTCAGTTTACGAAcatgttaaatatgttttaccaGAAATGAAAACATCAAAAGAAGAAATACCCGTATACATTTGTTCAAAATGCCACAAAACATTCCACtactttttcaaatttaaaagacTGTGTTTCAAAAATTATCGTCGATTACAAAACTACACAAAACAATTGCAAGGAGCCAATCACATACCAGACCAAAGATTTGGAGAAGTAcagataaacataaataattgtgaGGCACAAATCAAAGAAGAAATTGACAGCGATACATTGGAAGAAGTAAACGTAAAAGAAGAAATTCAAGACTTGTTGATGTTGTCTGAGCAATTGGAAGCACAAAATAAAGATAGTGCAAATAAAGAAAGGTATTATGAAACACTTCCAGAAGAACAAAATGGCGAGGCAATTGATGAAGACGGAGTATCTTTTATTGACAATTCAAATCAAAACGAAGATGGTCCAACTGTTGTTGTTTTAAATGAAGATTCAGATCATGTGGTTAATGATAACGATTCAGATTTTAAACCTTCTGATGAATCAGGGTCttctgaaaatgaaaatgaagaaaCTGTAATAGAAAATATTCCGAATACTCCAAAAACTAAACCATCTAAAAAACCAGCTCAGTGTACAATTTGCGGAAAATGGTTATCGTCTAATGGGAAATTAAAAAACCATCTAAAAATTCATGCGGGAATTCGTGACTATGAGTGCAAGATATGTAATAAGAAGTTTACTCAAAAAGGTAGTTTAGTGATACATTTAAAACGACACGCGGATGTTACAGACTTTCAGTGTAAAATTTGCAATCGAACTTTTGTCCAGAAATATGTGTATAAAAAACATTTAGAATTTCACGCGAATTTGAGAAAATATAAGTGCGACGAGTGCGATAAAAAGTTTGTGTATAATCATCGTTTGACTCAACATAAAAAACTCTGCCACCCAAAAGAAAAAAACACTCACAAATGTAACACTTGCGAGAAAACTTTTgatagttatattttattagttagccaTTCCCGCCAACATAAACTTAAAGGATTTACTTGCACAATTTGTCACAAAGAATTTGcagaaaaacatttatttaccgCGCACCAAAACACTCATTTGGGCATCAAAAATTACGAATGCGCGTTTTGCGATAAGAAATTCGTggcgaaaattaatttaaattcacatttaaaaacacATTCTCAAAGACCTAGAGAGTTTCAATGCACTGTAtgcgataaattatttatggaaAAACGCCATTTAAATAGTCATTTAAAAAGGCATGATCCCAATTTTGTTCCTCCACCTCGCGAAAGTAGTTCTTCTTTaacttgtaacatttgtaaaaGAGTATTTAAAACGAAACAATCGTTAGAACATCACATGGAACAACACACTGTTCCAAATAATTGCTCGATTAATTTGAATCCGGAAAGTTATGAATGTTTGATTTGTCAAAAATCGTTTATAAAACAAGCCCATTTAGATATACACATAAAAACACATTCTGGTGAAGCGATTAAATGTGATACTTGTGGAAAAGAATTTGCAGATGAAGCCAAAATGGCGCTGCATCTTCTGTCACATACAGAAGCGAAAAACCATATTTGTTTGATTTGTGACCAaagattttataaaagtaatgaGTTACAAGATCATCTTAGAACTCATGAAACTCtaagaaattataaatgtaccagatgtaataaaatatacccGAATAGAAAATCATTACAGTTACATTTGCGTCAACATGCCGCAGATAAAATTGCGCCGATTAAATGTAGTATTTGCAGTTTTGAATTTGTGCGACAACGAGATTTAGAACGACACATGGCGATGCattctcaaaataaaaattatgcatGTTCATTTTGTGATCGGAGTTTtgcaatgaaatatttgttaagaCAACATTTAAAGACTCACATTGATGTGTCACTTCCAAGTTTCAAATGTTCATTTTGCGGTAAAATATTCTCTGAATCTATCACtttaaagaaacatattttagaaatacaCGGTGGAGATCATCACTTTAATTGTACGATTTGCGAAAAAGAGTTTTCAAGTCATTCTAACCTCAAAAAACACGTCCAGGAATTGCATGCGGATGTTACATTATTAGATGAATCAGAACTTTCTTACATTTGTTCATTTTGTAAAGAGACTTTACCAGatgaaaattctttaaataatcatttattagaAGTACACTCTGTGGATAATGTGACGTCAGTTCGGTGCCCGATGTGTCAAGTAGAATGCGcgggaaaattaaatttaaagaaacatattATGGATTCACATTTTGGAGTACAAAAAAATGATTTTCCatgtttaatttgtaataaaacctATTCGAGAAAATCTTTGTTAAAAAAACATATTGAAACTCATACCAACGTAAAAAAATTTGCTTGTTCCTACTGTGGCCAGAGATTTAccctagaaaaatatttaaagaaacataTGGAGATGCACGAAAGAAAACAACTAGTAAACAATGAGTTTATGTATTGTGAAAAGTGCGACCAAAGATTCTTAACACATTACACTTACACTAAACATATGAAAACTATTCATAATCGGGCACTAAAGTGCGCGTTGTGCAACAAAAAATTCACATCATTTGCGGCACTAAAACGACACAGTGACAAACAGCATAAAGCCTCTGGTATATTCCCATGTTCACTctgtaaaaaaaagtttacaaaaaaAGAAGCTCTTGCAAAACATGGAGAATGCCACAGAAAGAAAAAATGTGTTGTTTGTCCAagaaaattctataaaaattcTGACTTAAAcaatcatttaattaaaattcacaCGGTGGAAATTGTGCAAGAGCTTCCGTGTAGCCTCTGCAACAGTGTCTTCACCAGCAAAGTTCTTCTGAAGAAGCACATGAAGATTCATGAAGTTGCTGTCAGTGGAGATACAGGAGAAGCTGTGTTAGGTTTTTAA
Protein Sequence
MCLSDTNVFRKDTVSVYEHVKYVLPEMKTSKEEIPVYICSKCHKTFHYFFKFKRLCFKNYRRLQNYTKQLQGANHIPDQRFGEVQININNCEAQIKEEIDSDTLEEVNVKEEIQDLLMLSEQLEAQNKDSANKERYYETLPEEQNGEAIDEDGVSFIDNSNQNEDGPTVVVLNEDSDHVVNDNDSDFKPSDESGSSENENEETVIENIPNTPKTKPSKKPAQCTICGKWLSSNGKLKNHLKIHAGIRDYECKICNKKFTQKGSLVIHLKRHADVTDFQCKICNRTFVQKYVYKKHLEFHANLRKYKCDECDKKFVYNHRLTQHKKLCHPKEKNTHKCNTCEKTFDSYILLVSHSRQHKLKGFTCTICHKEFAEKHLFTAHQNTHLGIKNYECAFCDKKFVAKINLNSHLKTHSQRPREFQCTVCDKLFMEKRHLNSHLKRHDPNFVPPPRESSSSLTCNICKRVFKTKQSLEHHMEQHTVPNNCSINLNPESYECLICQKSFIKQAHLDIHIKTHSGEAIKCDTCGKEFADEAKMALHLLSHTEAKNHICLICDQRFYKSNELQDHLRTHETLRNYKCTRCNKIYPNRKSLQLHLRQHAADKIAPIKCSICSFEFVRQRDLERHMAMHSQNKNYACSFCDRSFAMKYLLRQHLKTHIDVSLPSFKCSFCGKIFSESITLKKHILEIHGGDHHFNCTICEKEFSSHSNLKKHVQELHADVTLLDESELSYICSFCKETLPDENSLNNHLLEVHSVDNVTSVRCPMCQVECAGKLNLKKHIMDSHFGVQKNDFPCLICNKTYSRKSLLKKHIETHTNVKKFACSYCGQRFTLEKYLKKHMEMHERKQLVNNEFMYCEKCDQRFLTHYTYTKHMKTIHNRALKCALCNKKFTSFAALKRHSDKQHKASGIFPCSLCKKKFTKKEALAKHGECHRKKKCVVCPRKFYKNSDLNNHLIKIHTVEIVQELPCSLCNSVFTSKVLLKKHMKIHEVAVSGDTGEAVLGF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-