Pcup020304.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Poecilus cupreus
Gene Symbol
-
Assembly
GCA_963942605.1
Location
OZ012718.1:12112288-12121374[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 50 0.0026 0.5 12.5 1.8 1 23 31 53 31 53 0.98
2 50 1.6e-05 0.0031 19.4 0.7 1 23 59 81 59 81 0.98
3 50 0.00022 0.043 15.8 1.6 1 22 88 109 88 109 0.96
4 50 0.11 20 7.4 2.5 2 23 117 139 116 139 0.95
5 50 0.00043 0.082 15.0 0.5 1 23 143 165 143 165 0.98
6 50 0.00014 0.027 16.5 0.7 1 23 172 195 172 195 0.97
7 50 0.00034 0.066 15.3 1.8 3 23 203 223 201 223 0.96
8 50 4.2e-06 0.0008 21.3 1.2 2 23 230 251 229 251 0.97
9 50 1.6e-05 0.003 19.5 3.5 1 23 257 279 257 279 0.97
10 50 0.067 13 8.1 0.1 1 20 285 304 285 306 0.95
11 50 0.00013 0.025 16.6 2.9 1 23 329 351 329 351 0.95
12 50 7.4e-06 0.0014 20.5 1.2 1 23 357 379 357 379 0.98
13 50 0.0045 0.85 11.8 0.5 1 20 384 403 384 405 0.95
14 50 0.052 10 8.4 0.5 2 23 413 435 412 435 0.89
15 50 0.0021 0.39 12.8 2.6 1 23 439 462 439 462 0.94
16 50 0.0073 1.4 11.1 2.3 2 23 471 493 471 493 0.96
17 50 0.0007 0.13 14.3 0.3 3 23 501 521 500 521 0.97
18 50 1.7e-05 0.0033 19.4 2.9 2 23 528 549 527 549 0.97
19 50 7.6e-08 1.4e-05 26.8 2.6 1 23 555 577 555 577 0.99
20 50 0.63 1.2e+02 5.0 0.1 1 16 583 598 583 599 0.90
21 50 0.054 10 8.3 0.3 1 20 598 617 598 619 0.92
22 50 2.4 4.6e+02 3.2 0.1 9 20 646 657 646 660 0.86
23 50 0.037 7.1 8.9 0.0 2 20 669 687 668 689 0.96
24 50 0.00016 0.03 16.3 1.0 1 23 698 720 698 720 0.98
25 50 0.0074 1.4 11.1 0.6 2 20 727 745 726 747 0.93
26 50 0.12 23 7.3 0.0 2 23 754 776 753 776 0.87
27 50 1.6 3e+02 3.7 1.0 1 23 783 806 783 806 0.95
28 50 4.4e-05 0.0083 18.1 0.2 2 23 813 834 813 834 0.96
29 50 6.2e-07 0.00012 23.9 1.7 2 23 841 862 840 862 0.97
30 50 7.5e-07 0.00014 23.6 2.1 1 23 868 890 868 890 0.98
31 50 0.0076 1.5 11.0 4.3 1 23 896 919 896 919 0.97
32 50 0.0019 0.37 12.9 0.6 1 19 939 957 939 961 0.94
33 50 0.012 2.2 10.4 0.1 2 23 970 992 969 992 0.96
34 50 6.8e-05 0.013 17.5 0.9 1 23 998 1020 998 1020 0.98
35 50 0.0041 0.78 11.9 0.4 2 20 1027 1045 1026 1047 0.93
36 50 0.2 37 6.6 0.0 2 23 1054 1076 1053 1076 0.87
37 50 0.00013 0.025 16.6 0.2 2 23 1113 1134 1113 1134 0.96
38 50 1e-06 0.00019 23.2 1.9 2 23 1141 1162 1140 1162 0.97
39 50 2.1e-05 0.004 19.1 1.9 1 23 1168 1190 1168 1190 0.98
40 50 0.013 2.5 10.3 4.2 1 23 1196 1219 1196 1219 0.97
41 50 0.002 0.38 12.9 2.4 1 23 1252 1274 1252 1274 0.95
42 50 0.087 17 7.7 2.5 2 23 1281 1302 1280 1302 0.96
43 50 0.69 1.3e+02 4.9 0.6 1 16 1307 1322 1307 1328 0.83
44 50 0.13 24 7.2 3.0 3 23 1337 1358 1336 1358 0.94
45 50 0.067 13 8.1 0.2 1 23 1362 1384 1362 1384 0.96
46 50 0.003 0.57 12.3 2.8 1 23 1392 1415 1392 1415 0.97
47 50 0.011 2 10.6 1.3 3 23 1423 1443 1421 1443 0.97
48 50 5.5e-06 0.001 20.9 1.5 2 23 1450 1471 1449 1471 0.97
49 50 1e-05 0.0019 20.1 3.4 1 23 1477 1499 1477 1499 0.96
50 50 0.00052 0.098 14.7 3.4 1 23 1505 1528 1505 1528 0.97

Sequence Information

Coding Sequence
ATGTCGAAGGATCTAGAATTCATTTGGCTATTACATGAGAGAAACCATTGCACAGAGATACGAGGTCCTAATAATAAATGGATTAAGGTATTTAAGTGTCCATCGTGTCCTCAGACATTCAGAGAGCGAAATAAATTTCTGAGACATGGAATGAAGCACGTGAAGACACGAAACTACGCTTGTCCCATTTGCAAAAAAGCCTACAAGAACAAGTACATCCTCACAAAACACATGAAAATTCATAGCGGCATAGCTTACAAATTTACTTGTGAAATCTGCAATAAACGCTACTACAGCAAAAATCTATACGAGAAACATATAAGAAAATATCCTCCAAGCCGAGTTCTTGTTTGTCCAAAATGTAACAAGCAATATCACAAACAGAGTGATTACTCTTTCCACATGATGCGCGAACATCGTGATAGCTACTCTTGTTTCAGTTGCGGGTATGTTTTTGATTCTACAGAATCCTTACGGCAACATGTGCAAGTTCATAACGGACAAGCTAGCGAATTTCAGTGCGAATTTTGCGGCAAACCTTTCAGCAGTAATTTAACTCTGGATTCACATCTAAAAAATCTGCATTTGGGTCTCCGATGTGTTTTCTGTGACATTTGTGGAAAAAAGCTGTCTAGTAAATGCAGCTTGAAAGAACATATGCTGCTGCATAAAGGAGAAAAACCGTTGACTTGTGAACGGTGTGGCAAAACTTTCGCAAAGAGAAGTACTTTGAGGGTTCATGAAAGAACTCATACGGGAGAAAGGCCTCATGTATGTCCGCATTGCGAAAAACGCTTCACTCAGAGAAAATCGCTTGTAATACATGTGAGATCACATACTGGTGAACGACCATATCCTTGTGATTTATGTCCAGATAAGTTTAGCAGCAGAACAGGACTTAACTTACATCaatatattaaaatcttACACGCAGCAGATAACTTCACGTCGGTGTTAGGTCCTAGTAACCGTTGGCGAAAAGTGTTTAATTGTTCTTATTGTTCCAAAATATTTTCTCGCAGAAGTCAATTTCTTCGCCATAGTTCCATACACATGAACTGTAAACCATTCCAATGTTCGGAAtgtaaaaagaattttaaaacaGAATCTGCAATGACTTTACATATGAATATACACGTAGGAAATGTATATACTtgtgaaatttgtttaaaagAATTTGTATCTAAATCCGGTTTTCTAATCCATCAGACACATTATCCACCAGGATCCGCGAAAACTTGTGAAAAATGCGGTAAAATGTTTCATGGTTACCAAGCTTTAGCTATACATAATATTTCTGAAcatgaaaagaaatattcatgtCATTCTTGTAAAGAAAAATTCGATAACTCGGAAACATTACGGCAACATTTAGCTCAACAACATAATGAAACTGTTACTTCAGCTAATAGTTGCGAATTTTGCGGTAAAGTGTATGCAAGTGTTAGTTGCAAAACCAAACATATAAAGACGCAACATTTGAACTTTTATTTGGCAATATGTGACTTGTGCGGCAAAGAACTTTCTTCGAAACAATCGCTAAGAGACCATTTATTGATGCATAAAGGCGAGAAACCTTTAACTTGTGAACATTGTGGACaaacttttacaaaaataaacacgCTTAAAGTTCATATGAGAAAACATACAGGAGCTAAACCTTATACCTGTCAAATTTGTAAGAAAACTTTTACTCAAAGTAGTTCTTTGAAAATACATATTAGGAAACACACTGGTGACAGACCATATCCGTGTTCACTTTGTCCTCAAGCTTTTGTTCATCATAAGCAGTTCGCTTGTTTTTCATGTAAAAAACCGTTTTCTGACTCTCATGTTCTTGCAGCACATGTTGACAAgtCAGAAGATAATGACTGGAATACTCATGTAAATGGCATTACATTGCAAAACGAATATAAGTGTCcatcatattttgatatgttcaAAAACAACGATGCTCTGATTCGTCATATGCCCAAACATGTGGAAGAAGAAACTCCTCAAATCAGGTGCAACTTATGTAACAGACCCCTCAAAAGCTCTATTGCTTTGGAGAGACATATTTGGTTGGTGCACGAAACAAAAGGCGATATATTTCAGTGTAAAGTTTGCGAAAAGCCCTTCAACTACAGAACTATGCTCTCTCAACATATCGTTCGCCATCCTCCTGAAAAAGACCTCTCTTGTCCGTTATGCAACAAGAAATTTCACTACGAAAAAACATTACAAATACATCTTACGATTGAAAAATTGGGAGCTCTGCCTTGCTATGCTTGCAAAGAAACTTTCGCAACAGCAGAAGCTTTGAAAATGCATGCTATTGAACTACACGATTCAGCTGATTGTCGCTTCAGATGTGAGGTATGCGCAAAGCCCCTGTCTTGTAATCAAGCCATGACACAACACATGAAAGCAAGACACCTTGGCGGCAGCATTAATGTTTGCGAAATCTGTGGCAAGAAACTATCATCAAAAGCTTCTCTTCGAGATCATATGCTACTTCATCGAGGTGAACGGCCTATTTCCTGCGAGCAGTGTGAAAAAACTTTTACTACAAGATCTACTTTGCGGGTCCATCAGCGCACGCATACTGGAGCAAGACCGTACTCTTGCAAAACGTGTGGAAAATCTTTTACACAAATTTCTTCACTTACAATACACACACGCAAACATACAGGAGATAAACCATATTCTTGTAATTTATGTTCTggtaaatttgttagcaaaagTTGTCTTAAATTGCATCAAAAATCGAAACATAAgtCAGAAGATAATGACTGGAATGCTCATGTAAATGGCATTACGTTACAAAAAGAATATGAGTGCCCATCATGTTTTGAAACATTCAAAAACAACCGTGCTCTGATTCGACATTCGTGGACACATATGGAAGAAGAAACCCCTCAAATCAGGTGCAACTTATGTTACAGACCCCTCAAAAGCTCTATTGCTTTGGAGAGGCATATTTTGGTGGTGCACGAAACGAAAGGCAAATTTCAGTGTAAAGTTTGCGAAAGGCCCTTCAACTACAGACCTAACCTCACCCAACATGTCAGTCGTCATCCTCCAGAAAAAGATCTGTCTTGTCCGTTGTGCGACAAGAAATTTCACTACGAAAAAACATTACAAGTACATCTTACTATTGAAAAATTGGGAGCTCTGCCTTGCTATGCTTGCAAAGAAACTTTCGCAACTACAGAAGCTTTGAAAGTTCATGCTATTGAACAGCATGGTTCACCTGAATGTCGCTTTAGGTGTAAGGTATGCGCAAAACCAATGTCTTGTTATCAATCCATGATGCGACACATGAAAGCAAGGCACCTTGGTGGCTGCGTTAATGTTTGCGAAGTTTGTGGCAAGAAATTATCATCAAGAGCTTCTCTTCGAGATCATATGCTACTTCATCGAGGAGAACGGCCTATTACCTGCGAACAGTGTGGAAAAACTTTTACAAAAAGGAACACTTTACGGGTCCATCAGCGCACGCATACTGGAGCAAGACCGTACTCTTGCAAAACGTGTGGAAATACTTTTACACAAATTTCTTCTCTTACAATACACACACGCAAACATACTGGAGATAAACCATATTCTTGTAATTTATGTCCGAGCAAATTTATTAGCAAAAATTGCCTTAAATTGCATCAAAAATCGAAACATAAATCAGAAGAGGCGAATGGAGATCTCGAAATGACGCGTGACGCAGATAAattcttagaatattttaccgGCCCTGATAACCGCAAGCATAAACGTTATAAATGCCCCAAATGTCCAAAAATCTTCCAGtacaaaagtaaatttttatcgCACAGCGTAAAACACGTGAAAGTGAAAAGTTGCGTATGTACTGTTTgcaataaactattaaaatctcgATTTTCCATCAACGCTCATATGAAACAACATGACCACAGAGCATACAAATGTGAAGTTTGTCAAAAAGAGTATGCCATAAAATCTGGATTAGATTTCCACCAAAAACATTATCCCCCAACTATGGTAGCGCCATGTACGAAATGCAGCAGAAAATTCCATACTAAATTAGATTTACTAGTTCACACTACGAAAGAGCATCTATCAAACTTTACTTGTTACGCTTGCAGTGAATCTTTTCCTGATATTCAAtcattaaaaattcatgttgTAAAACACAACGGATCAGTCGTTTCACAATTTCAATGCGAATTTTGTGGACGACAGTGTTCTGGTAGACAATCATTAAATGTGCATCGAAAAAGCTTACATTTAGATATGCGATCGGTTATCTGTGATATTTGCGGAAAGAAATTGTCTTGTAAAAGAAGTTTGGACGATCACATGCGCATGCATAAAGGAGAACGTCCCCTTTCTTGTGAGCGCTGTGGAAAACAATTCACTACAAAAAATACGCTTCGAGTTCACGTGCGAACTCACACGGGAGAGCGACCACATGCGTGTCCTCATTGCGAGAAACGATTCACTCAACGAAATTCTCTTGTTGTTCATATTCGGAAACATACCGGCGACAGGCCATACGCTTGTGATCTGTGCAACGAAAAATTTGTTAGTCGGAGTTGTTTAAAAATGCACCGCAGATCGAAGCATCAATTAATAtga
Protein Sequence
MSKDLEFIWLLHERNHCTEIRGPNNKWIKVFKCPSCPQTFRERNKFLRHGMKHVKTRNYACPICKKAYKNKYILTKHMKIHSGIAYKFTCEICNKRYYSKNLYEKHIRKYPPSRVLVCPKCNKQYHKQSDYSFHMMREHRDSYSCFSCGYVFDSTESLRQHVQVHNGQASEFQCEFCGKPFSSNLTLDSHLKNLHLGLRCVFCDICGKKLSSKCSLKEHMLLHKGEKPLTCERCGKTFAKRSTLRVHERTHTGERPHVCPHCEKRFTQRKSLVIHVRSHTGERPYPCDLCPDKFSSRTGLNLHQYIKILHAADNFTSVLGPSNRWRKVFNCSYCSKIFSRRSQFLRHSSIHMNCKPFQCSECKKNFKTESAMTLHMNIHVGNVYTCEICLKEFVSKSGFLIHQTHYPPGSAKTCEKCGKMFHGYQALAIHNISEHEKKYSCHSCKEKFDNSETLRQHLAQQHNETVTSANSCEFCGKVYASVSCKTKHIKTQHLNFYLAICDLCGKELSSKQSLRDHLLMHKGEKPLTCEHCGQTFTKINTLKVHMRKHTGAKPYTCQICKKTFTQSSSLKIHIRKHTGDRPYPCSLCPQAFVHHKQFACFSCKKPFSDSHVLAAHVDKSEDNDWNTHVNGITLQNEYKCPSYFDMFKNNDALIRHMPKHVEEETPQIRCNLCNRPLKSSIALERHIWLVHETKGDIFQCKVCEKPFNYRTMLSQHIVRHPPEKDLSCPLCNKKFHYEKTLQIHLTIEKLGALPCYACKETFATAEALKMHAIELHDSADCRFRCEVCAKPLSCNQAMTQHMKARHLGGSINVCEICGKKLSSKASLRDHMLLHRGERPISCEQCEKTFTTRSTLRVHQRTHTGARPYSCKTCGKSFTQISSLTIHTRKHTGDKPYSCNLCSGKFVSKSCLKLHQKSKHKSEDNDWNAHVNGITLQKEYECPSCFETFKNNRALIRHSWTHMEEETPQIRCNLCYRPLKSSIALERHILVVHETKGKFQCKVCERPFNYRPNLTQHVSRHPPEKDLSCPLCDKKFHYEKTLQVHLTIEKLGALPCYACKETFATTEALKVHAIEQHGSPECRFRCKVCAKPMSCYQSMMRHMKARHLGGCVNVCEVCGKKLSSRASLRDHMLLHRGERPITCEQCGKTFTKRNTLRVHQRTHTGARPYSCKTCGNTFTQISSLTIHTRKHTGDKPYSCNLCPSKFISKNCLKLHQKSKHKSEEANGDLEMTRDADKFLEYFTGPDNRKHKRYKCPKCPKIFQYKSKFLSHSVKHVKVKSCVCTVCNKLLKSRFSINAHMKQHDHRAYKCEVCQKEYAIKSGLDFHQKHYPPTMVAPCTKCSRKFHTKLDLLVHTTKEHLSNFTCYACSESFPDIQSLKIHVVKHNGSVVSQFQCEFCGRQCSGRQSLNVHRKSLHLDMRSVICDICGKKLSCKRSLDDHMRMHKGERPLSCERCGKQFTTKNTLRVHVRTHTGERPHACPHCEKRFTQRNSLVVHIRKHTGDRPYACDLCNEKFVSRSCLKMHRRSKHQLI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-