Pcup020301.2
Basic Information
- Insect
- Poecilus cupreus
- Gene Symbol
- -
- Assembly
- GCA_963942605.1
- Location
- OZ012718.1:12104570-12106300[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2e-07 0.00048 21.4 0.0 5 36 1 32 1 40 0.90 2 2 1.3 3.3e+03 -0.5 0.0 14 26 126 137 122 137 0.80
Sequence Information
- Coding Sequence
- ATGGCTGAAGCAATAAAATTGGTTCGAGAAAAAAAAATGGGTTATTTTAAAGTAGCCAAGTATTTTCAAGTACCTAGAACCACTTTATTTCGTCTATGCCAAAAATATGAACTGTCTCCTGATAAGGCAGCAGCCACCACTTTAGGAAGAAAACCAGTGTTAGGCACACATcttgaaaatgttttagtaGAATATATTTTGACGATGGAAAGCAAGTTCTATGGCTGGACGAAAACCGATGTTCGTAGAATGGCATATATGTTGGCTAAACGTAATAACTTGCATAATCCATTCGCTGAAACCGGCATGGCCGGAAAAAAgtggttaaatttatttttaaaccgcCATAAAAAAGAATTGCCAGTGAGAAAACCCACTGGTACGTCTTTTGCGAAAGCGTgtgaattttataaagaaaatgttaaattttttaaccttCTGGAAGAGGTATACAGCAAAGGAAATTATCCACCGAATCGTATATATAATGTTGATGAATTAGGCCTCACGGTAATAGAAAGCAGTATACCTCAAGTTAATGGTCACAAAGGAAAACGACAAATAGCTTCACTTACGGCAGCAGAAAGAGATTCACTTATAACAATAGTTGTTTCCATGAATGCTACTGGTCATTTTGTACCACCTTTCATTATTTTCCCTCGGAAAAATATGAACAATCAGCTAATGAGAGGCTGCCCTCCAGGAGCTGTAGGAGTTGCACACCCGTCAGGGTGGATTCAAATGCACATATTTACTAACTGGTTCAAgcattttattaaacatacCAATCCAACACCAGATTCGAAAGTTCTACTGATATTAGATGGACACCGTAGTCACACACGTAACATAGATGTAATAGACCTTGCTAGAAAACATAACGTAGAAATAGTATCCATTCCTCCTCACACAACCTACAAGCTCCAGCCATTGAATAAAACTTTTATGGGTCCGTTGAAAGTGTATTATTGTGAAGAAATACGAATctggattaaaaacaataacagaCCACTGACCCCTTTCGATATTGTGGAGCTATTCGGAAATGCTTATTTAAAAGTACAAACAGTCGAGATTGCAGTAAATGGGTTTCTGGTTACAGGACTCTGGCCATTAAACAAAAACGTATTCAGTGATATTGACTTTATTGCTGCAGAACAAAGTGCTATGAAAGATAGAAGTACACATGTTACTCCAACAAAATCCAGCTCTTCGTCTAAAGAAAGACCATCAAATACCAATACCAGATCACCTGAGTATTCATCCAGATCTCTTTATGACACAAGCCCAGTGCtagaaaagaaatgtaaaatatttaacaggGAAAGTAAAGCTACTGTAGCAGCACTAATAACTTCGTCACCTTATAAAAATGATTTGATAGAGAAAAGTaagaacaaaattgaaaaacaaaatatatcgaCAAAGAGACAGAATAAGAAAAAAACAGAAGACAAAAAGAAAGGAAACCAAGGAAAAacgaaaactaaaatttattatcCTGCTGAGGATGAAGACGAAGTCCAGTTTAAGACAGACAGTGAACCTGATGCCACAATAGAAGAAGAATTTCCAGACTCTTCGGATGCAGAATGTATGTTTTGTCAACGACTTTTTTCTCAAGATAGTCAAGGAGAAGCTTGGATTAAATGCCTAATGTGTGAGTTCTGGGCACATAATGACTGCGTTACTTCAGATTTTGAAACTTGGATatgtgatttttgtaaatag
- Protein Sequence
- MAEAIKLVREKKMGYFKVAKYFQVPRTTLFRLCQKYELSPDKAAATTLGRKPVLGTHLENVLVEYILTMESKFYGWTKTDVRRMAYMLAKRNNLHNPFAETGMAGKKWLNLFLNRHKKELPVRKPTGTSFAKACEFYKENVKFFNLLEEVYSKGNYPPNRIYNVDELGLTVIESSIPQVNGHKGKRQIASLTAAERDSLITIVVSMNATGHFVPPFIIFPRKNMNNQLMRGCPPGAVGVAHPSGWIQMHIFTNWFKHFIKHTNPTPDSKVLLILDGHRSHTRNIDVIDLARKHNVEIVSIPPHTTYKLQPLNKTFMGPLKVYYCEEIRIWIKNNNRPLTPFDIVELFGNAYLKVQTVEIAVNGFLVTGLWPLNKNVFSDIDFIAAEQSAMKDRSTHVTPTKSSSSSKERPSNTNTRSPEYSSRSLYDTSPVLEKKCKIFNRESKATVAALITSSPYKNDLIEKSKNKIEKQNISTKRQNKKKTEDKKKGNQGKTKTKIYYPAEDEDEVQFKTDSEPDATIEEEFPDSSDAECMFCQRLFSQDSQGEAWIKCLMCEFWAHNDCVTSDFETWICDFCK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -