Pcup025712.1
Basic Information
- Insect
- Poecilus cupreus
- Gene Symbol
- -
- Assembly
- GCA_963942605.1
- Location
- OZ012719.1:32110289-32111020[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.7 4.1e+03 -0.8 0.0 8 22 10 24 9 25 0.84 2 2 2.2e-09 5.2e-06 27.6 0.0 1 41 51 90 51 94 0.88
Sequence Information
- Coding Sequence
- ATGCTGGAAAAGGAGGAAAACTGGGATGCAATAACAGCCTATATAATCGAGGCGATCAGCCAGAAGGAGGCAGATGACAGAGCGGCGGAGACCGCAAGCAGaaaaatgtCAACAGAATGCAAAAGAAAAAACTCAAACTGTGGAAATCATACTGAAGAAAATATGAGACGTACAATAGAGGCTGTGAGAAATGGTTCTTCTGTAAACTGTGCTTCTAAAAATTTCGGCATTACTAGGAAAACCCTTGAAAGgaagattaaaaataatatttccacATTAGGTAAAATGGGCCCGGACAGCATGTTAACGGAagctaataaaagaaaattagttCTACACATTAAAAAGGCTTAA
- Protein Sequence
- MLEKEENWDAITAYIIEAISQKEADDRAAETASRKMSTECKRKNSNCGNHTEENMRRTIEAVRNGSSVNCASKNFGITRKTLERKIKNNISTLGKMGPDSMLTEANKRKLVLHIKKA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -