Pcup024320.1
Basic Information
- Insect
- Poecilus cupreus
- Gene Symbol
- -
- Assembly
- GCA_963942605.1
- Location
- OZ012719.1:24479803-24480534[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.2e-11 2.9e-08 34.9 0.1 4 40 17 53 15 57 0.93 2 2 2 4.8e+03 -1.1 0.1 4 12 221 229 220 231 0.87
Sequence Information
- Coding Sequence
- ATGCCTATAagtaaaaatggtaaaaaacgCGATTCTATCAATAAGAATGATTTGCAATTAGCGATTGAAGCtattatgtcagaaaatatgACTATAAGGGAAGCTGCTCGGTACTATAAAATTGCCAAAAGTACCAATTATCGTCATTTTAAACTTCACCGTGAATCTGGCAGTAAGGAATTTTCATATTGCGGTACAAATGCTACAAAACTAATTTTCTCACCAGAGGAAGAAACCGTGCTAGCAGATTATATAAAAATGGCAGCGAAATATCATTAcggattaaataaaaaagatataagAAAATTGGCATGTCAGTATGCTTTGGAAAATGGTAAATCCGTGCCAGAAACATGGCACAAAGACCAGGAAGCTGGCAAGAAGTGGTTACGATGGTTCCTAAAACGTCAAAGAACACTGTCCTTACGAATTCCGGAAGCCACAAGTCTGGCACGGTCTACTAGCTTCAATAAACACAACGTGGCTACATTTTTTGGTAATCTTAGGCAGTGTATGGAAACGTTTAATTTCCAGCCTaatcaaatttacaatattgACGAAACTGGTAATACAAATGTTCATAAGCCATCAAAAATTATCGGGCCAAAAGGATTAAAACAACTAGGCAGCATGACTTCCGGAGAACGAGGTTTCAATGTGACTATGATTGCTGCCATTAATGCAATAGGAAACCATGTTCCCCCTATGCTAATTTTCCCGTGTCCACTTTAA
- Protein Sequence
- MPISKNGKKRDSINKNDLQLAIEAIMSENMTIREAARYYKIAKSTNYRHFKLHRESGSKEFSYCGTNATKLIFSPEEETVLADYIKMAAKYHYGLNKKDIRKLACQYALENGKSVPETWHKDQEAGKKWLRWFLKRQRTLSLRIPEATSLARSTSFNKHNVATFFGNLRQCMETFNFQPNQIYNIDETGNTNVHKPSKIIGPKGLKQLGSMTSGERGFNVTMIAAINAIGNHVPPMLIFPCPL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -