Pcup020838.1
Basic Information
- Insect
- Poecilus cupreus
- Gene Symbol
- lov
- Assembly
- GCA_963942605.1
- Location
- OZ012718.1:19494057-19504745[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.6e-18 8.7e-15 55.7 0.0 1 44 434 477 434 478 0.96
Sequence Information
- Coding Sequence
- ATGACGCAGTCGCACTACTCGCTCCGGTGGAACAACCACCAGTCCCACATCCTGTCGGCGTTCGACGCACTGCTGCAGGCCGAGACGCTGGTGGACGTGACGCTGGTGTGCGCGGAGACGTCGGTGCGAGCGCACAAGGTCGTCTTGTCCGCGTGCTCTCCCTTCTTCCAGCGCATCTTCAGCGAGAACCCCTGCAAGCACCCCGTCATCGTGCTGAAGGACTTCCACGGCTGGGAGGTGCAAGCCATCGTGGATTTCATGTACAAGGGGGAGATCAGTGTTGGGCAGGAGCAACTGCAGAACCTCATCAAAGCCGCCGAGTCGCTCCAGGTGCGCGGTCTGGCGCATCACGACCAGCTGGCCGTGGACAAAGAGTCCAGCTCCATCACGAACCAGACCCCCACGCCGTCCACGTCCCCCAACGACTACGATCGCTTCGGTCGCTTCTCGCTGCCAACCCCCGGCACGACGGTCCGCGCTGTGGGCGAGCGCGCGTCGCCGTTCTCGCCGCTGCCGGGCCCGGGGCCCACCTACGAGCCGCCGCTCAAGCTGCCCCACATGGCGCACCCCTCGTTCGCTAACGACACCCTGCTGCCCAGGCACGAGTGCTCGAGTCCGCTGCCCCGGAGGAAGCAAGCCCGTCCGAGAAGGAGATCGGGAGAGCTGTGTGGCGCGCAGGACTTGAGTAAACCACCAGCATCGCCCTCGCAAGACCGCCAACAAGAACGACAACCCTCCGCACAACAACAAGAAGAAACCGCCGAGAACCTATGTATGAAGAAGCCCGTGAAACGCGAAGACCCCCCCGCGGTGCAGAAACCCGTGGAGGCCCACCAGCAGACCCCGACACATCACCAGCGAGAGCACCACCATCACCACCACCACCAGCACCATCAGCGAGAGATGAAGACGGAGCCGGAACGCGAAATCGCTAGTCCTCCGGAGCTCGACCTCAGCATGACGGCGGACAAGGAGTTCGCAGCCGCGTCACCGCCGCTGGGGCTGCCTCCGGTGCTCATGCACCCGGAGCATCATCTCGACACGCACAGTCATAGTCCGCTGCCCTTCCCGCCCATGCCCTCGGTGTCGGCTCTCGCCATGACACCGCCGCATAGTAAGTTTTTCGGGCTGGACTCACCCCTGGGTTTGTTCCCGCCTGGGCTGGACGGCTGCAGGAACCCGCTGCTGGACATGACGGACCCCCGCACCACGCCCGACACGCAAATGTTCACAAAGAAGAAGATTGGGCGACCAAAGGGCCAGCACTCCGCGCCCCGCGGCGGCCCACCCCGGTCCTGGACGAACGCCGAGCTGACGGAGGCGCTGCAGCACGTGTGGAACAAGAAGATGACAACGTCACAAGCGTCGCGCATCTTCGGCATCCCATACAACTCGCTGCTAATGTACGTGCGTGGAAAGTACGGCAAGAGCCTCAAGCTTGAACAGCTCCGCAAGGACTGCATCGGCGGACCTGGGGGCCCACTAGACCTTCTGTCGCTCGGcggcaacaacaacaacaaccagTCGAAGGCCGAGCGGGAGCGCGAACGCAGCGAACGAGACCGCGAAGATGTGAGCGTCAATACACGCCCGCCGAGTGAAGAACTGCCTCCGCCTGTTTTCAATCCCTTCGCGCCGAACTTCTACCCGGACTTCGGCTCCGGGTTTCCGATTCCTGTGAGCATGATTCATCTGCTGCCGCAGAGCGAGAAGAACCGCGAGAACCTGGCGCATCCTGCCGGAGCTACGGGGATGGACGCGGCGGATGAATGCAAGGACAGGGAGAGAGAGCGCGCGATGAAGGAGCTGGAAGACGACCCTCACGACTTGTTCCGACCGCCGGCGCTCTCTCGCGACGAGCGGCGCGAACTAGTTCAGCAGAACGGTCAGGACTAG
- Protein Sequence
- MTQSHYSLRWNNHQSHILSAFDALLQAETLVDVTLVCAETSVRAHKVVLSACSPFFQRIFSENPCKHPVIVLKDFHGWEVQAIVDFMYKGEISVGQEQLQNLIKAAESLQVRGLAHHDQLAVDKESSSITNQTPTPSTSPNDYDRFGRFSLPTPGTTVRAVGERASPFSPLPGPGPTYEPPLKLPHMAHPSFANDTLLPRHECSSPLPRRKQARPRRRSGELCGAQDLSKPPASPSQDRQQERQPSAQQQEETAENLCMKKPVKREDPPAVQKPVEAHQQTPTHHQREHHHHHHHQHHQREMKTEPEREIASPPELDLSMTADKEFAAASPPLGLPPVLMHPEHHLDTHSHSPLPFPPMPSVSALAMTPPHSKFFGLDSPLGLFPPGLDGCRNPLLDMTDPRTTPDTQMFTKKKIGRPKGQHSAPRGGPPRSWTNAELTEALQHVWNKKMTTSQASRIFGIPYNSLLMYVRGKYGKSLKLEQLRKDCIGGPGGPLDLLSLGGNNNNNQSKAERERERSERDREDVSVNTRPPSEELPPPVFNPFAPNFYPDFGSGFPIPVSMIHLLPQSEKNRENLAHPAGATGMDAADECKDRERERAMKELEDDPHDLFRPPALSRDERRELVQQNGQD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00469546;
- 90% Identity
- iTF_01225959; iTF_01275168; iTF_01275516;
- 80% Identity
- iTF_01225959;