Pcup048412.1
Basic Information
- Insect
- Poecilus cupreus
- Gene Symbol
- retn
- Assembly
- GCA_963942605.1
- Location
- OZ012729.1:14956890-14975259[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.8e-21 4.1e-17 63.9 0.0 13 89 122 196 113 196 0.93 2 2 7 4.9e+04 -3.6 0.0 26 38 335 347 319 348 0.72
Sequence Information
- Coding Sequence
- atggcttcggactcggtcccggGGCCTAGGGAGAAGCGAGCTCGCGTCAATTCCGACGACGAGGATCCCGCACCAATGTTTCTGCTAGTGAAACGAGCAAGCGGCGACTTCAGTAAAGTTAGCCCATTTCTAATATCTAGATTAGTGAAAACCATTGCCGGAGATGTGAAAGTCATCCGAAAAATTAAAGATGGCCTCCTGATTGAAACTAAATCAGCAGATCAATCAAGAAAATTATTAGCAGCTAAGACTCTAGGGGATTATGTCGTTTCTATTTCGCCACATAACACCCTTAACTTTTCTAAGGGTGTCATTTACTGCAAGGATCTGCTAAACTGTACAACTGACGAAATACTGACTGagttgaaaaaggaagGAACTCCAATTAACAGGCTACCGATAATGGCAAAATCAGTTCTGGATCTTTACGAACTCTACAATCTTGTCATTGCTAGAGGAGGTCTAGTGGACGTCATCAACAAGAAATTATGGCAAGAAATTATCAAAGGACTGCATTTACCTTCCTCTATCACTTCGGCTGCTTTCACCCTTCGAACACAatACATGAAGTACCTCTACCCATACGAATGCGAAAAGCGTCGCTTGAGCACGCCAGCAGAGCTCCAAGCGGCCATCGACGGAAACAGACGAGAAGGCAGACGCAGCAGTTACGGCACCTACTCCGAAATGGTTCAACGAAGTCCCGTGCCGTCCTCCCAGATGTCGCCGCTATCGCTCGTGACGCAGCAACAGACCCTGGCGGCTAGAGGGGGCCTCGGTGCTGGATTGGGGCTGCACAATGGGGCCCACCACCCCAGTCACCCCCAACCGCTCGGCCAACCACCTGCAGGCGGTCCAGTCCCCGGGTTGGCCCCCAGCGAGTTCGAAGCCCGCATGGTGGAATACGTGAAGCTCCTCAACAAAGAACTGCGCAGTTCTGCTGCTACCCCACCTCGACAAGGCTCCTCGTCGCCTCCTAGTGCCACGTCGCCGCTTAACCCGTTGGAGATGTCTCGTTTAACTCTTTGGAACCTCTACAACAACAACGCCACACCTCCGTGTCCAGAGCCGCAGAAAGAGGCGCTCAACCTTGCGGACAACACGAACCCGCTGGTCAATCCTGTGAAGAGGGAACCTGAGAGGGATCCTCCACCTCCTGCCAAGAGGCTGCAGCATGAGGATGACAGAAATAGTCCTCCTTCCACTCCCAGCACtcatatcaaaattaacagcagagGAGATGCGCGAAACGGCGACAACTCGCTAGTGGTGAGCATGGAACTAAACGGGGTGATGTACCAAGGAGTGTTGTTCGCACAATCGCCGCCAGGAGCGCGCAGCGCACGACTGGCGTCTTAA
- Protein Sequence
- MASDSVPGPREKRARVNSDDEDPAPMFLLVKRASGDFSKVSPFLISRLVKTIAGDVKVIRKIKDGLLIETKSADQSRKLLAAKTLGDYVVSISPHNTLNFSKGVIYCKDLLNCTTDEILTELKKEGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKRRLSTPAELQAAIDGNRREGRRSSYGTYSEMVQRSPVPSSQMSPLSLVTQQQTLAARGGLGAGLGLHNGAHHPSHPQPLGQPPAGGPVPGLAPSEFEARMVEYVKLLNKELRSSAATPPRQGSSSPPSATSPLNPLEMSRLTLWNLYNNNATPPCPEPQKEALNLADNTNPLVNPVKREPERDPPPPAKRLQHEDDRNSPPSTPSTHIKINSRGDARNGDNSLVVSMELNGVMYQGVLFAQSPPGARSARLAS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -