Pnob066615.1
Basic Information
- Insect
- Poecilobothrus nobilitatus
- Gene Symbol
- stc_1
- Assembly
- GCA_947095535.1
- Location
- OX352774.1:213804127-213806808[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 1.5 5.1e+04 -3.7 1.6 15 19 426 430 425 430 0.81 2 10 0.056 2e+03 0.9 0.2 4 10 459 465 458 467 0.94 3 10 2.7e-06 0.093 14.7 17.0 1 19 471 488 471 488 0.93 4 10 3.5e-06 0.12 14.3 13.3 3 19 526 542 518 542 0.87 5 10 1.4e-07 0.0047 18.8 16.7 1 19 582 600 572 600 0.85 6 10 8.7e-06 0.3 13.0 15.1 4 18 648 662 641 663 0.87 7 10 0.044 1.6e+03 1.2 12.6 1 11 703 713 703 725 0.91 8 10 3.4e-10 1.2e-05 27.1 15.5 1 18 730 747 730 748 0.97 9 10 0.68 2.4e+04 -2.6 0.2 6 10 777 781 776 783 0.73 10 10 0.74 2.6e+04 -2.7 2.3 3 7 784 788 781 790 0.79
Sequence Information
- Coding Sequence
- ATGTCACAATATTCGCAATCAAATGAACAAAATCAATCAGCAGCATCTGGTATAACCAATTCATATAATAGTTATGTGATTGGTACTTCGACGAATTCATTATCAACTGGATCAATAACAACAGCGACATCACCAGCATCGTTAATCAATAACAATCAAATGTTAGAAAATTCAGTACGTAGATTTTTAGAAGATACTTGTTATAATAATAGCATTAGAGGAGATAATGGTATATATGGTTACAATAATATAGATGGAAGTACTTTTAATAATTTTAGCCAAAATAATTACTATCAATCTAATCCTGGTCCAAGTAATCAATCCTATTCATTTAATAGTACTACATATTATAATGGATTATCAAATTTTAATGATACAACAAATCCATTTTTTTATAATTCGAATTATAATAATCAAGGATATTATAATAATACTGCCTATCCTTCTGCAAGTGGGACAGCACTTCATGCAACTGCACCAGAATTTGTGCCACAATTTAATAATTTAAGTCTTGAAGATTCATCAATTAAACTAAATTCAAAATCATCATTATCAAGTACAAATGCTCAAATAGTATCGTCATCCGCTACAGAAGATGCAACAAAATCATTTGATACAAAAAATTCAACGTATAAATATACAAATAACAACAATAATAATAATAATAGAAATCGTTCATCAAAAAAAGATAAATATCAACGTAATAATGCAGATGCTTATAATAATCATCGTACTGAAAGATTAGAAACTAATCGAAATTTAGAAACTGAAAATATAAATAATTATCAAAATCGTCGTTCTCAAAATAATCAAAATAAAAATCAATATCAAAAATATGATAATCATAGACATAATAAACGTCGTGATAATTGGAATCGAAATCGTGTTAATGATTTAAATGAAACTTCAGTTGCAAACAATAATACCAGTAGTAATAATAGTAATAATAATACTAATGGTAATAATAATTTTAATAACAATTCACAAAATTCTCCAAAAAAATGTAATTCTGAACATTCATCACCCAGATCAATAAAAGATAGTCCGAAAAAAACTCAATTAATTATAAATCCTTTAACTCCTGAAAATGAAAAATTATCACAACGTGAAAAATTAATAAGAGAAATAGAAGGCCGTCGTCTTGAATGTCTTGTATGCGTTGAATGCATTAAAACTCATCAGCATGTGTGGAGTTGTTTAAATTGTTATCATATATTTCATTTGAATTGTATAATAAAATGGGCATCTAGCTCAAAATCAGAAGATGGTTGGCGTTGTCCAGCTTGCCAAAATACATCAAAACAAATTCCTCGTGAATATTATTGTTTTTGTGGTAAAGTAAAAAATCCCGAATATAATCGTAATGATTTAGCACATAGTTGTGGTGAATTATGTGGTCGTAAAGATAATTGTTCACATCCATGTACATTATTATGTCATCCAGGACCATGTCCACCATGTCAAGCATTAATTACACGTCAATGTGGTTGTGGTAAAACTGTTAAATCAATGCAATGTTATTTAAAAGAAGATATTGAATGTGATTTAAAATGTGGAAAGTTATTAAATTGTGAATTGCATGAATGTGAAGAAAAGTGTCATCAAGGTAAATGTCCAGCATGTACGCATAAAATTGATCAAAATTGTTATTGTGGAAAAAATGAACGACAAGTTACATGTACTCGAGAAACTATAGAAAAAAAAACATACAGTTGTGGTAAACCATGTGGAAAAGATTTAGCTTGTAAAAATCATAAATGTAAAGATGTTTGTCATAAGGGTGATTGTAAACCATGTAAAATGATTCCAGAATTAATTACAACATGTCCTTGTGGAAAAATGGCTATTGGAAAAGATGAACGAAAATCGTGTTTAGATCCTGTTCCAGTATGTCCTGGAATTTGTGGAAAAACATTAAAATGTGGTTTACCTTCAAAACCTCATCATTGTACCAGTAAATGTCATGTAGGAAATTGTCCACCATGTAATAAGCAAACTGCTGTAAAATGTCGATGCGGTCATATGGATCAAATGATTAAATGTCGTCAATTATCGACTAGAGCTGATGATGCAAGATGTAAAAAACGTTGCACAAAAAAACGTAGTTGTGGCAAACATAAATGCAACCAAGAATGCTGTATTGATATAGACCATATTTGTCCGATGCCTTGTAATTATACACTAACATGTGGTAAACATAAATGCGATCAACCTTGTCATCGAGGTAATTGTCCACCTTGTTATCGTAGTTCATTTGATGAATTATATTGTGAATGTGGTGCAAATGTTATTTATCCACCAGTACCTTGTGGTACAAAAAGACCAGCATGTGATCGACCATGCTCACGTCAACATACATGTGATCATCCTGTTCAACAGTAA
- Protein Sequence
- MSQYSQSNEQNQSAASGITNSYNSYVIGTSTNSLSTGSITTATSPASLINNNQMLENSVRRFLEDTCYNNSIRGDNGIYGYNNIDGSTFNNFSQNNYYQSNPGPSNQSYSFNSTTYYNGLSNFNDTTNPFFYNSNYNNQGYYNNTAYPSASGTALHATAPEFVPQFNNLSLEDSSIKLNSKSSLSSTNAQIVSSSATEDATKSFDTKNSTYKYTNNNNNNNNRNRSSKKDKYQRNNADAYNNHRTERLETNRNLETENINNYQNRRSQNNQNKNQYQKYDNHRHNKRRDNWNRNRVNDLNETSVANNNTSSNNSNNNTNGNNNFNNNSQNSPKKCNSEHSSPRSIKDSPKKTQLIINPLTPENEKLSQREKLIREIEGRRLECLVCVECIKTHQHVWSCLNCYHIFHLNCIIKWASSSKSEDGWRCPACQNTSKQIPREYYCFCGKVKNPEYNRNDLAHSCGELCGRKDNCSHPCTLLCHPGPCPPCQALITRQCGCGKTVKSMQCYLKEDIECDLKCGKLLNCELHECEEKCHQGKCPACTHKIDQNCYCGKNERQVTCTRETIEKKTYSCGKPCGKDLACKNHKCKDVCHKGDCKPCKMIPELITTCPCGKMAIGKDERKSCLDPVPVCPGICGKTLKCGLPSKPHHCTSKCHVGNCPPCNKQTAVKCRCGHMDQMIKCRQLSTRADDARCKKRCTKKRSCGKHKCNQECCIDIDHICPMPCNYTLTCGKHKCDQPCHRGNCPPCYRSSFDELYCECGANVIYPPVPCGTKRPACDRPCSRQHTCDHPVQQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -