Basic Information

Gene Symbol
nfxl1_1
Assembly
GCA_947095535.1
Location
OX352774.1:9453034-9456121[+]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 2 7e+04 -7.8 5.6 15 19 147 151 146 151 0.81
2 15 0.68 2.4e+04 -2.6 0.9 4 10 182 188 182 188 0.91
3 15 3e-08 0.001 20.9 17.0 1 19 196 213 196 213 0.99
4 15 2.8e-08 0.00099 21.0 13.1 1 19 249 268 249 268 0.97
5 15 1.2e-08 0.00043 22.1 13.7 1 19 303 321 303 321 0.99
6 15 7.1e-09 0.00025 22.9 9.4 1 18 357 374 357 375 0.97
7 15 0.18 6.3e+03 -0.8 0.5 1 10 384 393 384 393 0.75
8 15 0.012 4.3e+02 2.9 14.2 3 18 411 426 409 427 0.91
9 15 2.4e-08 0.00083 21.2 12.6 3 18 438 453 436 454 0.91
10 15 2 7e+04 -4.7 12.0 9 19 500 510 493 510 0.88
11 15 0.071 2.5e+03 0.5 4.7 3 12 523 532 513 532 0.85
12 15 0.32 1.1e+04 -1.6 0.9 6 10 591 595 590 595 0.90
13 15 0.00026 9.2 8.3 6.3 1 11 601 611 601 612 0.96
14 15 8.3e-05 2.9 9.9 12.0 3 19 641 657 640 657 0.94
15 15 1.5e-06 0.053 15.5 11.6 1 18 708 727 708 728 0.90

Sequence Information

Coding Sequence
ATGAACAAAAAAGGAAACAATAGTCTTGTAAACAGCATAACAAAAAAAAAAGATAAGCTTCATATTACAAAAAACTGTAAAACATCTGACAACTATGAATCTAGTTCAGAGGAAGAAGATGTAAACGAAGTTTCTATTTTGAATCAAGTATTTCAAAGCTATTCTGGTGAAATAAGTTTAATTTCAAAAACTAGATTTTTTTTGGAAAATTTTTTTCAATCTGGTTCAGCTATTTGCTTAATATGCATTGAAACAGTGAAAAGAGTTCAACCAATATGGTCTTGCTCTAATTGTTACTGTTTTTTTCACTTCAATTGTATAAAACGGTGGGCTAATGATAGCATTATACAACAAAAATTAAGTGAAGATCAAGAAGTAGGATATTATAACAATCAAGGAGAATTTATACCAAAGAAAATAAAACTAGTACGATGGTGTTGTCCTAAATGTCGTCATGAATATGCTTCAGAAAATATTCCAAAATTATATGAATGTTTCTGTAAAAAAGAGGTAAATCCACAATATCATCCTTGGTTACTTCCACATTCATGTGGTGAGCGATGTGAAAAATATTTGATACCTTATTGTGGACACAAGTGCTTATTACTCTGTCATCCAGGACCATGTCCACCATGTCCACAAAATATATCTTTATCTTGTCAATGTCGTAAATCTAAACCTATAACGGTTCGCTGTTTTAATAAAATTTGGAACTGTGAAATTAAGTGTCAAGAGAAATTACTTTGTGGAATTCATAAATGCGACAAATTTTGTCATGAACCTGGAAAATGCCCTCCTTGTAAAAAGCAATCCAAACAAAAATGCCAGTGTGGTAATGAAAGCGCTCAACGAAATTGTTCTGAATCAACTTGGCATTGTAAAATGGTATGCAATAAATTGTATTCTTGCGGTTTGCATAAATGTAGAAAAATTTGTCATTCTGGAAATTGTGGTGAATGCCCATTAGGTTTACCAAGAGCATGTCCTTGTGGTAAAAATCAGAAAGTAATTGCTCCTTGCAGTGAAATTGTGGAACCATGTGGTGATAGTTGTCAGAAGGTATTAGATTGTGGTATTCATTATTGTGCTGAACGATGTCATAAAGGAAATTGCAGTCAGTGCCTTGTTATTGTACAAAAGAAATGTAAATGTGGGTTACATACAAAGGAATTACCATGTTCAAAAAATTTCGCTTGCGAAACTAAATGTAAATTGATGAAAGATTGTAGAAAACATCTTTGTAACAAAAAATGTTGCGATAGCCAATGTCCGCCTTGTGATAAAATTTGTAACAAAACTCTTTTATGTAAAAAGCATAAATGTAAATCTGTTTGCCATGAAGGACCTTGTTATCCATGCGACTTAAAATCATCGGTTAAATGTCGCTGTGGAAATACATCCATTGTTGTACCTTGTGGCAGGGAAAGGAAAGTTCGGCCACCTAAATGTTTGTTGCTTTGCAGAATACCGGTTAAATGTCATCATGAAAATCCACATCGTTGTCATATGAATGAATGTCCACCTTGTACACAAAAATGTGGTCTTAGAAATGATACAACCAACTGCGAGCATCCTTGTGATGCAAGATGTCATGATGCTGTTAAAGTTGAATTAAAACAGCCAAAAAGCACAAATATTTGGGAGTGGAATTCGGATACTTTTGAATATAAAAAACTACCTCATCCCAAATGTGAAATTAAAATAATGGTACCTTGTATAGGAGGCCATGAAATTGCTGCTTGGCCTTGTTGGAATTCAAAGCCAACATCATGTCAAAGACTTTGTCAGAGGCTTTTAAAATGTACCAATCATAAATGCACTAGAGTTTGCCACATTGTTCCAAATTTAGACAATAAAGAGGAACAAGATGGATGTATTTCATGTTTAGACCCTTGTCTAGTAAAAAGACCAACAGGTTGCATTCATAAATGTAAGCGGCTCTGTCATCCACCACCATGTGATATGTGTTCAGCTCATATTAAAACTGCTTGTCATTGCGGTATCACACAAGTTATTTATAAATGTAGCGAGTTTTATTCCTCAGTATTAAATATAGAAGAATTAAAACAAAATCAAGAGACATTAAAAAGTTGTGGCAATCGTTGTATTCGAAATTATGCATGTGGTCATCGCTGTTTATCTAATTGTCATTCAGGTCCTTGTCCGAATGCTGAATCTTGTAAAAAGAAAGTTAAGATATATTGCGATTGTAAAAACCTAAAATTAGAAATTTCTTGTGAGAAATACCGGAAGGGCATGAAAGAATTAATTTGTGATGGAAAATGCGAAGAAAAGAAAGCTCTTGAAGAACGCTCACGTAAAGAAGAAGAAGAAAAGCTGAAAAAACTTGAAGAAGAAAAGAATCGAATTGAATTAGAATTATATGAAAAAAAATTCGGCAAGAAAAAATATCGCGAAAGAAAAGTTGTTGAACGTCCAACAAAGAAAAATATAGACATTAAACTAATAATTCTAGCAAGTGTTATCGGTGTCATTTCTATAACTCTAATGATTTATTTGTTGTGCTAA
Protein Sequence
MNKKGNNSLVNSITKKKDKLHITKNCKTSDNYESSSEEEDVNEVSILNQVFQSYSGEISLISKTRFFLENFFQSGSAICLICIETVKRVQPIWSCSNCYCFFHFNCIKRWANDSIIQQKLSEDQEVGYYNNQGEFIPKKIKLVRWCCPKCRHEYASENIPKLYECFCKKEVNPQYHPWLLPHSCGERCEKYLIPYCGHKCLLLCHPGPCPPCPQNISLSCQCRKSKPITVRCFNKIWNCEIKCQEKLLCGIHKCDKFCHEPGKCPPCKKQSKQKCQCGNESAQRNCSESTWHCKMVCNKLYSCGLHKCRKICHSGNCGECPLGLPRACPCGKNQKVIAPCSEIVEPCGDSCQKVLDCGIHYCAERCHKGNCSQCLVIVQKKCKCGLHTKELPCSKNFACETKCKLMKDCRKHLCNKKCCDSQCPPCDKICNKTLLCKKHKCKSVCHEGPCYPCDLKSSVKCRCGNTSIVVPCGRERKVRPPKCLLLCRIPVKCHHENPHRCHMNECPPCTQKCGLRNDTTNCEHPCDARCHDAVKVELKQPKSTNIWEWNSDTFEYKKLPHPKCEIKIMVPCIGGHEIAAWPCWNSKPTSCQRLCQRLLKCTNHKCTRVCHIVPNLDNKEEQDGCISCLDPCLVKRPTGCIHKCKRLCHPPPCDMCSAHIKTACHCGITQVIYKCSEFYSSVLNIEELKQNQETLKSCGNRCIRNYACGHRCLSNCHSGPCPNAESCKKKVKIYCDCKNLKLEISCEKYRKGMKELICDGKCEEKKALEERSRKEEEEKLKKLEEEKNRIELELYEKKFGKKKYRERKVVERPTKKNIDIKLIILASVIGVISITLMIYLLC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
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