Basic Information

Insect: Poecilobothrus nobilitatus
Gene Symbol: -
Assembly: GCA_947095535.1
Location: OX352772.1:29722499-29724914[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.00029 0.048 16.0 2.9 3 23 101 122 99 122 0.94

2 8 0.072 12 8.5 0.5 2 21 157 176 156 177 0.94

3 8 0.28 46 6.6 5.3 1 23 337 359 337 359 0.97

4 8 1.4 2.3e+02 4.4 0.6 1 23 366 389 366 389 0.91

5 8 4e-06 0.00065 21.9 2.9 1 23 571 593 571 593 0.98

6 8 0.36 59 6.3 2.9 1 23 599 622 599 622 0.97

7 8 0.0001 0.017 17.5 3.6 1 23 687 709 687 709 0.97

8 8 6.3e-06 0.001 21.3 0.8 1 21 716 736 716 736 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.00029	0.048	16.0	2.9	3	23	101	122	99	122	0.94
2	8	0.072	12	8.5	0.5	2	21	157	176	156	177	0.94
3	8	0.28	46	6.6	5.3	1	23	337	359	337	359	0.97
4	8	1.4	2.3e+02	4.4	0.6	1	23	366	389	366	389	0.91
5	8	4e-06	0.00065	21.9	2.9	1	23	571	593	571	593	0.98
6	8	0.36	59	6.3	2.9	1	23	599	622	599	622	0.97
7	8	0.0001	0.017	17.5	3.6	1	23	687	709	687	709	0.97
8	8	6.3e-06	0.001	21.3	0.8	1	21	716	736	716	736	0.94

Sequence Information

Coding Sequence: ATGGTTGATTTTAAGCCTAAATTACCGGAATTATTTTCAATATCAGATGTCGAAAATGTTTGTAGAATTTGTTTATGTGCTAATAGTATTTTATATTCAATATTTGAAAATGAAATTGATACATTAATTTCAGCTTTTACTTTATATAAGGCTCATAAAAATGATGGTTATCCGCATCAAATTTGTCAAAAATGTTACGAAGATATTAAGGCAGCGTATTGTTTTATGAAACAATGCCAATCTGCTCATAATTTTGTAAAATTGTTTTTAAAAATGCCATTATCTAAGAAAACAATTATTTGTTATTTGTGTACAACCAATTTTTGTAGTAATTCAAACCTGAAAAGACATTTAAAAAATATTCATGACTTAGAGTGGGAAATAGGGAAGCGTAGACCAGATATTTCTTATGGCTTCAATAATTCTGTAAATGCTATAAATTTTAGAGAAGATAGTAATTTAAGAACTGAATGCAAATCTTGCGGTGAACAATTTGAGACTGAACAAGGTTATAAACAACATATTTGTGCAAATAATAATGAAGATGATTTTAGGCTTTTTGTGGATGAGGAGGATATTAAATTAAATTTTGACAATTCCAATTCAAGTACAATTAAGTATAGTAAAGAATTAAGAGAAAACGAAAATAAATTTATATCAAATATTCCAACATCAAACATTTTAGAAAATTTTGGAAATTTGGATGTAGCATCTCCCATACAGGACATAAACTCTAATGAAAGTGAATTATCCAATCCAATACCTCTAATTAAAGCACCGACATTTAAAGATTTGATTATAAATAGCAACACAGAAGATGAAAAAACTAAAATGTTAGGTTATCTTAATCTGATGCCAGAACAAAAGCTTGAAGAATATGAACATTTAATAGTCTTAAAGAAAGATGAAAGAAGAAGGGCATATAAAATTTTAAAAAAGTTTAGTCGAAATAAAAGCAAATCAATTCTAAGAACCAAAAAAAACTTCGTTAAGACTGAAGATGGTAAATTTCAATGCTGTAAATGCAAGAAACAATTTGAAAAAATGAATTCCATAAGAAGACACGAATTAAGTCATTTAAAAGATCCAAAACCATTTGCATGTGCCATATGTTCGAATAAATTTTCAAAAATAGATTATTTGAAATTTCATGTTAAAAATGCACATCCAAATACAATAATCGAACGTCCTTATCAATGTGTTATATGTAAAGACTTACATGTGAAAGTTTTAGATCTTTTACATCATTTTCGGATTTGCGGAGTTCAAAAACAATTGTTTACAGATAATCAATTTTTAAAATCTTTTCATAAAGACATAAAACAAACGAAATGTAAAAATAATAGAAATAGTTTAAAAAAAGTTCCGAATATAAAACTGGAAGAATGTCGTAATCAAAGTTCTAATGATTTCAATATTTTTGACCCTAATGACGAATCTGCTTCTAATTCTGATCAACACAACTACAATGGTGAATTATCTTTTGATCCAGTGAATTACTGTGATGCTAATTTTATTGACGATACAATATCTGAACAAGTAAACAGTTATTATAAATCTAATATCAGTGTCCAAAATTCTAATCATCAATCATTTTATGAAAAGAATAATATTAATTTTTTAAAATCTTTGTTAGATGTAGAAGGCGCTATAGATTCTGATCTTATGTTAAAAAAAATGGAAGTTACAGAAAGAAATTCTTACGGAAAATTTGAATGCGAAATATGCAAAAAAGATTTTAATCGAAAAGCTCATTTGCAACGTCATTATGTAACGCATACAACAAATAAACTATATGTATGTGAATTTTGTTACACTAAATTTTCTTGTCCTGAATATGTTATTACACATATGAATCGGAAACATATTGACAAAGTTTCTCAAATTGTAAATGACCATGCTAAATTACAGAATTATGAATTGATTAAATTAAATAATCAATACAGCAAAAAAATAAATGAATTCTCTAACTCAATAAATTCTGAATTTGTAGTTAGAGTGACACCACCAAAACAAAATATTCCCAAATATGATATGTTAAAAACAAAGGATGGCAAATTTGAATGCAAAACATGTCATAAAATTTTTAGTAGAGCAGAACATGTCAGACGTCATGAATTAATTCATTCGGATGTACCAAAACCGTTTGCGTGTAAATTTTGTAATCGGGTTTTTTCAAGAGCAGATAATTTAAAAAAACATTTGAATTGTTATTGTATGAAAAATGATTTATTAAAAAAATCGTCATCAATTCTTAAATCTAAATTAGCTTCATCATCAATAAAGGAAACTTAA
Protein Sequence: MVDFKPKLPELFSISDVENVCRICLCANSILYSIFENEIDTLISAFTLYKAHKNDGYPHQICQKCYEDIKAAYCFMKQCQSAHNFVKLFLKMPLSKKTIICYLCTTNFCSNSNLKRHLKNIHDLEWEIGKRRPDISYGFNNSVNAINFREDSNLRTECKSCGEQFETEQGYKQHICANNNEDDFRLFVDEEDIKLNFDNSNSSTIKYSKELRENENKFISNIPTSNILENFGNLDVASPIQDINSNESELSNPIPLIKAPTFKDLIINSNTEDEKTKMLGYLNLMPEQKLEEYEHLIVLKKDERRRAYKILKKFSRNKSKSILRTKKNFVKTEDGKFQCCKCKKQFEKMNSIRRHELSHLKDPKPFACAICSNKFSKIDYLKFHVKNAHPNTIIERPYQCVICKDLHVKVLDLLHHFRICGVQKQLFTDNQFLKSFHKDIKQTKCKNNRNSLKKVPNIKLEECRNQSSNDFNIFDPNDESASNSDQHNYNGELSFDPVNYCDANFIDDTISEQVNSYYKSNISVQNSNHQSFYEKNNINFLKSLLDVEGAIDSDLMLKKMEVTERNSYGKFECEICKKDFNRKAHLQRHYVTHTTNKLYVCEFCYTKFSCPEYVITHMNRKHIDKVSQIVNDHAKLQNYELIKLNNQYSKKINEFSNSINSEFVVRVTPPKQNIPKYDMLKTKDGKFECKTCHKIFSRAEHVRRHELIHSDVPKPFACKFCNRVFSRADNLKKHLNCYCMKNDLLKKSSSILKSKLASSSIKET

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -