Pnob042130.1
Basic Information
- Insect
- Poecilobothrus nobilitatus
- Gene Symbol
- -
- Assembly
- GCA_947095535.1
- Location
- OX352773.1:81340653-81344482[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 8.7e-05 0.014 17.7 0.7 1 23 260 282 260 282 0.97 2 12 0.0068 1.1 11.7 2.1 1 23 377 400 377 400 0.97 3 12 0.0036 0.58 12.6 1.0 1 23 410 432 410 432 0.99 4 12 7.3 1.2e+03 2.2 1.3 1 23 453 476 453 476 0.89 5 12 0.0054 0.88 12.0 4.0 1 23 508 531 508 531 0.97 6 12 0.022 3.5 10.1 2.8 1 23 623 646 623 646 0.96 7 12 0.00051 0.083 15.2 0.7 2 23 673 695 672 695 0.95 8 12 0.025 4 10.0 2.5 1 23 721 744 721 744 0.94 9 12 0.021 3.5 10.2 3.3 1 23 756 778 756 778 0.97 10 12 0.053 8.6 8.9 6.9 1 21 833 853 833 856 0.94 11 12 0.00045 0.073 15.4 0.2 2 23 905 926 904 926 0.95 12 12 0.047 7.6 9.1 0.3 2 23 936 957 936 957 0.96
Sequence Information
- Coding Sequence
- ATGGAGGGAGATACAGAAACGGAAGTTCCAGTATTTTTTCGCGGAATTTGTCGAGCTTGCATAAAAAAGAAAAAAGAACTATTTCCTTTATTTGGGGGCGCCAAGATTAAGTTTGGTGAAAAATGCTTTACAATATCAGAAATTTTATTTTTAGGTGGTCGTGTAAAGACAATTTATGATGATAAATTGCCAAAACATGTTTGTCGAAAATGTCTTACAAGGTTAATAGAAATATTTAGTTTTCAACTGAAGTGCATTGAATCAGATTTGAAATTAAAGGCAATATTGTCAGGACATATTAAATCACCAAAAAAAGAAATAATTTTAGATCAATGCAATGATAAGGAAGGTGATGTTAGTATAGATTCTGGAGTAAAAAAAGAAAAATTAGATTCAACATCGGGTTCAATCAACCTTCCTGAAATTGCATTTGAAAAAGTTGGTGGTGAAACTGATATTGTACATGATACCGAAAATATTAATAACAATAACACTAGTAGCTCTAAAGGTTCCATATCAGATATTGTAGTTTCTATTTTGGAAGACAAAGATCAACAAGTATCAGTTTCTATGACTTTGACATTAAATGATAAAAACCAAACAAGACAACTTCCACAAACGCTAGAAAGACAACCAACAATTCAAGAGGTAAAATCAATAGCGACAGAAAAGAAAGAATTTTCTTCTGTGGGAGATAAAAATCAATCACTGAATGAGTTAAATGAAGAAAAATCTAACTCAAAACAAGGTTCTGAGGTAGATAAAAATCAAGGCAAATTTATTTGCACATTTTGTAAGTATTCGTTTGACACATGGTCTGATTTAGGGAAACATATTGTTAAACATAAAATTCAAAACAATTATGGACGACTTAAAAGTGAATCACCACCCCCAACTCTTACTTCAGAAAATCTTACAGCAAGAACTGAAACTCTGGAAAGCATTCCCAATACGGAAGAAATAGATATCCAAAACAATTGTAACATATCTATTGAAGAAAGTGAATGTAATATGATTGAAAACATTGAATTAAATAAAGAAAGAAGTAATGAAATAAGATTAAGTGTGTTATCTGAACAAGAGATGCCAATATTAACCTCATTTCAGCAATCAGGCCATGAAGAACGATTTTATTGTGAATTTTGTCCGGCAAACTATAAGTACAGGCAAGATGTTAAAAAGCATATAAGAAAAAAACATATTGATAAATACCCTAATGATCGAAAATATGAATGTGACATTTGTAATAAACTTTTTATTATGTACTTAGATTTCATTCGACATAAAAAGACACATAAAGATCGTTCGCATTCAATGGAAAGCAATGAAAATAATTTAGATCCTTCACACATGCAATACAAATGTTTACAATGTTTAAAATTATTTCCTAAATTTTTATATGTTCGAAGACATTTATTTGGAGAACATAACATAAAATGTACCGAAATAACTAAAAATTATCGAAAAATTTTTAATAAACAGCGTTTACTAAAACACTTTGAGAAGGAAAAGAGAGGTATATATACTTGTTTAATTTGTCACAAAAAATTTAAGAAATACGTTGAAATTGTTAGACACCGACGTCAAAATCATAACAAAAAAACGCCAAATAAATCTGAAACAATTTTGGCGGGAAAAGATGTTAAATTATCAATTAAAAATACCTTAGATAATTACTTTTTAAAACCAAATGGTAGAATCAATAATGAAAATGAACTAAATTGTACAAATGAAATTAAAAATAATGAAAATAATACAGATACAACAGAAATGAATCAACAAAATAATTTAAAAAAAGAAAATGTATCAAATAAAATTAATGATTCTGACGAATTAATTTCTAAAGATTTAACAAATCCGACAAGGTTTTGCTGTGTTTATTGTCCAACGCATTATGCCCGTATAAATGATTTACGGGTCCATTTGAAAATTAAACATAATAAAAGCTTAAGTAATGTTAATGATGTTCCAACCGTATCAACCGTTGAATTATTAGAAAGTTCTCCAGAAACCTGGAAATGTGAAGAATGTCGAATTGTTTATTCGAATAAAAAAAGTTTATCAGCTCATTTAAAACAAAAGCATGCTGAACCTATAGTACAAATGAAAAGTACTTCTAAACCAATTCAAGAATTGAATACAAAAACAGGACAAAATATATACAAATGTAAATTGTGTGATGCTACATTTTCTTCTTTTTTTGGTTGGAAAAGTCATACCTTCAGTAAACATAGAAACACAAATAAAAAATTAGCAGTTACATCTTATGAATGTCCAACTTGTAAAAAAACATTTTTACGTAAAACTAGCCTAATTTGTCATTTAAAAGTTCATGAATTCAGTAAAAATTTAACTGATGAAAATGTTAATCGAACAAAAATATCAATAACAACTACAAGTACTAATGTAGAAAATGATTCAGAGCAAAATAATGTATCTACAAGTTCGTTAAATAATTCATCGAATAGTTTAGATATTAATGATGTAAATCAAATCCATAAATGTTTAAATTGTCCGAGTATTTTTGATAACAGATCAAATTTAAGACGGCATACAAGATGTCATCATAGTGATAAAGTAAGAGAATACACTCAGGAAAAATCACAAAAACATATGTTTCAATGTTTAGCATGCTACAAATGGTTTTTAGCTAATGCACATTTAAAACTTCATATTAAAAGACATCTGAGCGCTTTAGGAGTTACAGAAATTACATGCGACATTTGTCCAAAAACATTTAATGATGGAAAATCATATACAAAGCATTTAGGTGTACATAGAGCTGTTGCAACAAAAAATAATCGTTATTGCAAAGAATGTTTAATAATATTCCCAAATGAAAAAGGTTATAAAATTCATATGTATAAACATAAATAA
- Protein Sequence
- MEGDTETEVPVFFRGICRACIKKKKELFPLFGGAKIKFGEKCFTISEILFLGGRVKTIYDDKLPKHVCRKCLTRLIEIFSFQLKCIESDLKLKAILSGHIKSPKKEIILDQCNDKEGDVSIDSGVKKEKLDSTSGSINLPEIAFEKVGGETDIVHDTENINNNNTSSSKGSISDIVVSILEDKDQQVSVSMTLTLNDKNQTRQLPQTLERQPTIQEVKSIATEKKEFSSVGDKNQSLNELNEEKSNSKQGSEVDKNQGKFICTFCKYSFDTWSDLGKHIVKHKIQNNYGRLKSESPPPTLTSENLTARTETLESIPNTEEIDIQNNCNISIEESECNMIENIELNKERSNEIRLSVLSEQEMPILTSFQQSGHEERFYCEFCPANYKYRQDVKKHIRKKHIDKYPNDRKYECDICNKLFIMYLDFIRHKKTHKDRSHSMESNENNLDPSHMQYKCLQCLKLFPKFLYVRRHLFGEHNIKCTEITKNYRKIFNKQRLLKHFEKEKRGIYTCLICHKKFKKYVEIVRHRRQNHNKKTPNKSETILAGKDVKLSIKNTLDNYFLKPNGRINNENELNCTNEIKNNENNTDTTEMNQQNNLKKENVSNKINDSDELISKDLTNPTRFCCVYCPTHYARINDLRVHLKIKHNKSLSNVNDVPTVSTVELLESSPETWKCEECRIVYSNKKSLSAHLKQKHAEPIVQMKSTSKPIQELNTKTGQNIYKCKLCDATFSSFFGWKSHTFSKHRNTNKKLAVTSYECPTCKKTFLRKTSLICHLKVHEFSKNLTDENVNRTKISITTTSTNVENDSEQNNVSTSSLNNSSNSLDINDVNQIHKCLNCPSIFDNRSNLRRHTRCHHSDKVREYTQEKSQKHMFQCLACYKWFLANAHLKLHIKRHLSALGVTEITCDICPKTFNDGKSYTKHLGVHRAVATKNNRYCKECLIIFPNEKGYKIHMYKHK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -