Basic Information

Insect: Poecilobothrus nobilitatus
Gene Symbol: -
Assembly: GCA_947095535.1
Location: OX352773.1:88450138-88454485[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 7.6 1.2e+03 2.1 0.3 2 19 108 125 107 130 0.71

2 9 0.00092 0.15 14.4 0.3 2 19 257 274 256 279 0.93

3 9 0.03 4.9 9.7 4.6 3 23 294 315 292 315 0.92

4 9 8.7e-05 0.014 17.7 1.5 1 23 336 358 336 358 0.97

5 9 0.00018 0.03 16.7 1.0 1 23 364 386 364 386 0.98

6 9 1.5e-05 0.0025 20.0 0.8 1 23 392 414 392 414 0.98

7 9 0.011 1.8 11.0 3.2 2 23 421 442 421 442 0.98

8 9 5e-06 0.00081 21.6 1.7 1 23 448 470 448 470 0.97

9 9 0.035 5.7 9.5 3.6 1 23 476 499 476 499 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	7.6	1.2e+03	2.1	0.3	2	19	108	125	107	130	0.71
2	9	0.00092	0.15	14.4	0.3	2	19	257	274	256	279	0.93
3	9	0.03	4.9	9.7	4.6	3	23	294	315	292	315	0.92
4	9	8.7e-05	0.014	17.7	1.5	1	23	336	358	336	358	0.97
5	9	0.00018	0.03	16.7	1.0	1	23	364	386	364	386	0.98
6	9	1.5e-05	0.0025	20.0	0.8	1	23	392	414	392	414	0.98
7	9	0.011	1.8	11.0	3.2	2	23	421	442	421	442	0.98
8	9	5e-06	0.00081	21.6	1.7	1	23	448	470	448	470	0.97
9	9	0.035	5.7	9.5	3.6	1	23	476	499	476	499	0.97

Sequence Information

Coding Sequence: ATGAATTTTGACGAAAAACTCATTGAAGAAGTTAGAAATGCATTCCTGTTTAATTTAAAAATTCCGGAATATAAAATAACAAAGAAAAAAGATTGTGTTTGGGTAGAAATAGCAGAAAAACTTGGAAGCACAGATATGGAATTTTATCAAGAAAACCTAACTGTTGATCTTAATCCAGAGTATATATTTGATACAAAAATATCACATAAAGAAAGTTCAAATGGAGATATTCCTAAAAACTTTAAAATTAAAAGTGAATTAGACGTTTCAATTGAAAGAAAATGTGGGGAAATATATTTTGGAAATGATTTATTTTATTTAAATTGTAACTACTGTGGTGGTAGATATCAGACCATTAAAGTATTTGCACAACATTTTATTCAAAATCATTTAAATTTAAATGTAGACCAAACAATTCTAGCTCTTAAAAAAATTTTATCAGACGATGATGAAAATGACAATTGGAATGATTCAAATATGAAATTAATTGGTTTAAATTTTGAAGGTGGAGTACAAGAAGAAACACCAGATGAAAATAAATGCAATGAATTTGAATTAATCAACGAAGAGGACATAAAAGATGAAATAGACAAAGAAGAAAGTTCTAATAAAGATGATATTGATAACGGATCAGATTTTGATGCGGATTGGATAAAAGAAGAGAAAAAAGTAAAAAAATCTAAAGGAAGAAGAAGAAGAACAGCAGCCGAATCAAGTGTTAATGGAAATGAGAATTTAAATCAAGAAAATGATGATAAAAGAAAATGGGTATGTAGTGTTTGTAATCAACCCTTTACTAGACGAGATAATATGCTTAGACATAAATGGAAAATACATAAGGAAAAACCTAATCCTGATTATGGAGAAATACGTTTAGATTGTAAATGGTGTGGACAACATTTTAAAAGGCATTCAGATCGTTCAAGGCATGAAAATCAACAACATGAACCTGATGGTACAAAAATTAATCGTAGACGAAATTATAAAGAAAATCCATTAGAACGACatgtttgtgaaacatgcggtaattcatataaacatgcatggagtttacaagagcatttaagaatacacacaggagaacgtccgtttgtatgtaatttatgtaatgcaacatttgctaaaaggcaaaatttcatagttcatcaaaaatatcactcgggtgaacgacgttttaaatgtcaatattgtgataaaggatttgttcaaaaaacaaaactaattttacatgaaatggttcatactggtacttataaagctcaatgtaatatttgtggtagacaatttcgttgtggttcaagattaaatgttcatatgaaaaggcatttatatgataaatgtcataaatgtgaaatatgtgaaaaaagGTTTTATACTGCTGACTCTTTAAAAAGACATACTGCAATTCATTCAGATAACAAACCATTCCGTTGTGATATTTGTTTAGCAGAATATTTTACAAAATGTTCTTTACAAAAGCATGTAAAAAGGAGGCATAAACCAACTGATGGACAAGTATCAAATAAACCAAATTTAGTAATTAATTCTACAAATTTAACAATTAATACTACAAGTCCAGTTATAAATTCTACTAATGTAGTCATCCAACCTATAAATTCAGTAATTGAGCCTACAATTCAAATAATTGATCCTTCATCTTCATTAATAAGCCCGACATGTTTAGTAATTCGTCCAGAAATAAATAATGCAATAGAAAACTCTGCAGGACTATCAGAACCATCTCAAAATAATTAA
Protein Sequence: MNFDEKLIEEVRNAFLFNLKIPEYKITKKKDCVWVEIAEKLGSTDMEFYQENLTVDLNPEYIFDTKISHKESSNGDIPKNFKIKSELDVSIERKCGEIYFGNDLFYLNCNYCGGRYQTIKVFAQHFIQNHLNLNVDQTILALKKILSDDDENDNWNDSNMKLIGLNFEGGVQEETPDENKCNEFELINEEDIKDEIDKEESSNKDDIDNGSDFDADWIKEEKKVKKSKGRRRRTAAESSVNGNENLNQENDDKRKWVCSVCNQPFTRRDNMLRHKWKIHKEKPNPDYGEIRLDCKWCGQHFKRHSDRSRHENQQHEPDGTKINRRRNYKENPLERHVCETCGNSYKHAWSLQEHLRIHTGERPFVCNLCNATFAKRQNFIVHQKYHSGERRFKCQYCDKGFVQKTKLILHEMVHTGTYKAQCNICGRQFRCGSRLNVHMKRHLYDKCHKCEICEKRFYTADSLKRHTAIHSDNKPFRCDICLAEYFTKCSLQKHVKRRHKPTDGQVSNKPNLVINSTNLTINTTSPVINSTNVVIQPINSVIEPTIQIIDPSSSLISPTCLVIRPEINNAIENSAGLSEPSQNN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -