Basic Information

Insect: Poecilobothrus nobilitatus
Gene Symbol: -
Assembly: GCA_947095535.1
Location: OX352774.1:43653720-43655692[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.14 22 7.6 3.5 6 23 261 278 261 278 0.99

2 9 2.4e-05 0.0039 19.4 5.8 1 23 284 307 284 307 0.97

3 9 3.5e-07 5.7e-05 25.2 0.5 1 23 316 338 316 338 0.99

4 9 0.00028 0.045 16.1 1.9 1 23 346 369 346 369 0.97

5 9 0.012 1.9 11.0 1.3 3 19 377 393 376 397 0.91

6 9 0.067 11 8.6 0.3 2 23 406 427 406 427 0.92

7 9 0.014 2.3 10.7 2.3 1 23 434 457 434 457 0.95

8 9 1.9e-06 0.00031 22.9 1.4 1 23 464 486 464 486 0.98

9 9 0.00017 0.028 16.7 12.5 1 23 492 515 492 515 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.14	22	7.6	3.5	6	23	261	278	261	278	0.99
2	9	2.4e-05	0.0039	19.4	5.8	1	23	284	307	284	307	0.97
3	9	3.5e-07	5.7e-05	25.2	0.5	1	23	316	338	316	338	0.99
4	9	0.00028	0.045	16.1	1.9	1	23	346	369	346	369	0.97
5	9	0.012	1.9	11.0	1.3	3	19	377	393	376	397	0.91
6	9	0.067	11	8.6	0.3	2	23	406	427	406	427	0.92
7	9	0.014	2.3	10.7	2.3	1	23	434	457	434	457	0.95
8	9	1.9e-06	0.00031	22.9	1.4	1	23	464	486	464	486	0.98
9	9	0.00017	0.028	16.7	12.5	1	23	492	515	492	515	0.98

Sequence Information

Coding Sequence: ATGATATGCCGATTATGTTTAGAAAAATCAAACAATTGTTTTCATTTTTTTGAATCCGAAGGATTAAGTTTGAAAGCAGCAGTAGTTATTTCAAAACATTTTAGTTTTAAGCTCAATCAAAAAGATACAGAATCCTTATACATATGTCGCTCTTGTTGGGCTATAACCAACAATTTTCATAATTTATATATTTTTGTTGAGAATTCGCAAAAGGAGTTTGAAATTATATTGGAGAGTGATCCAAAATATAAACAAGACACTACTATTTTGAGTGAAGAATGTTTTAAATATGAAATTGAATCTTTCAATGGTGAAAATAGTATCGACAACGATTGTTCAAAAGGTTTTCAAGATGATGATTCCTTAATTCCGTTTCAAATTTCAGATGAAAAAATTAAAGAAATACAAAATATTAATCAAAACAATCATGGTTCTAAAAATAATGTGAATTTGTTTAATTCTGAAAAGCTTAAAAAAACAAGAGCAGCAACAAAACTTGAGAAGGCTGAAGGGAAATGCGACATAAACAAGCAAGGAGAGTTGAAAATCAAAAACATTAAAAGACGTGGGAGGCCTACTGCAAAAAAAAATGTAAAAACAATTAAATCTATAGAATTAAAATGTAATAGCGATAAAATTGCAAGTGAAACAGTTTCTGACGAAGAAATTTTTAAAATGAAGAGAATAACATGCCAAATTTGTATGATTGAAATTCCAACATTTTTAGAGTTGAAGaagcatttcatagatattcacgacgaagatggctacgcaatttgttgcgataaaaaattttataaacgttacaagtttgttcatcatctaaaaatgcatgtaaatccaaatGAATATAAGTGTCCTCACTGTGATAAGCAATTTACCAATAAGAAGTACATCACCCATCATATAAAGAACGTACATATAAAAACAGAAAAAGTGCGAAATTTCACATGCGAAACTTGTAGTAAGTCATTTGCTCAAAAGGGAGCTTTAGTTCGACATATGTTAACGCACATTCCCGATAACGAGAAATTGTTCCACTGTGAAAAATGTGAAAAAAGTTTTCCTACCGAAGGTGTTCTCCGTACTCACAAAAAAACTGTACACGAAGGACGTTATGGAGGAATTTGTGCTCTCTGTGGAAAAAAATATCAAAATCCTCAAGATTTGAAAAGACATTGTTTGGAACATGAAGGCATTACAGAGCCAAAAGCACAATGCGATGTATGTGGTGATTGGTTAGCAAATAAATATAAATTGAAAAGACACATGATTAAACATAATACTGCCCATTTagaacatagatgtccacattgtaataaattatctccaaatgaaatagcattaaaaagtcacatcaaatttacacatgacgatagcaataaaattcaccaatgtaatatttgtgagaaagcctttaggagacgaattgatttaaaagaacatatgacagtccacacgggagaacatttatatacttgtccacattgcccaagaacatttactcatcattccaatttacatcatcatagaaaaaaaatgcatcgtaaagaatTTGATGAAGAACGACTTAGGCGTGGCATGAAAAAGATTCCATGGATCAGAACTGTCGAACTGAAGAAAAATGAATCGTTAATTACTTCAATAGAAGAAACTATTTATTAA
Protein Sequence: MICRLCLEKSNNCFHFFESEGLSLKAAVVISKHFSFKLNQKDTESLYICRSCWAITNNFHNLYIFVENSQKEFEIILESDPKYKQDTTILSEECFKYEIESFNGENSIDNDCSKGFQDDDSLIPFQISDEKIKEIQNINQNNHGSKNNVNLFNSEKLKKTRAATKLEKAEGKCDINKQGELKIKNIKRRGRPTAKKNVKTIKSIELKCNSDKIASETVSDEEIFKMKRITCQICMIEIPTFLELKKHFIDIHDEDGYAICCDKKFYKRYKFVHHLKMHVNPNEYKCPHCDKQFTNKKYITHHIKNVHIKTEKVRNFTCETCSKSFAQKGALVRHMLTHIPDNEKLFHCEKCEKSFPTEGVLRTHKKTVHEGRYGGICALCGKKYQNPQDLKRHCLEHEGITEPKAQCDVCGDWLANKYKLKRHMIKHNTAHLEHRCPHCNKLSPNEIALKSHIKFTHDDSNKIHQCNICEKAFRRRIDLKEHMTVHTGEHLYTCPHCPRTFTHHSNLHHHRKKMHRKEFDEERLRRGMKKIPWIRTVELKKNESLITSIEETIY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -