Basic Information

Insect: Poecilobothrus nobilitatus
Gene Symbol: Zfp42_1
Assembly: GCA_947095535.1
Location: OX352772.1:41401898-41403879[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00092 0.15 14.4 0.7 2 23 192 214 191 214 0.95

2 10 1.5e-05 0.0024 20.1 0.9 1 23 274 297 274 297 0.97

3 10 0.037 6.1 9.4 1.1 3 23 309 330 307 330 0.97

4 10 0.28 45 6.6 2.1 1 23 371 394 371 394 0.89

5 10 0.00016 0.026 16.8 1.2 1 23 408 430 408 430 0.96

6 10 2.1e-05 0.0034 19.6 4.4 1 23 436 458 436 458 0.99

7 10 0.00027 0.045 16.1 0.8 2 23 468 489 467 489 0.97

8 10 5.7e-06 0.00093 21.4 2.3 1 23 497 519 497 519 0.98

9 10 1.3 2.1e+02 4.5 1.0 1 23 525 550 525 550 0.88

10 10 3.3e-05 0.0054 19.0 0.9 1 23 558 580 558 580 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00092	0.15	14.4	0.7	2	23	192	214	191	214	0.95
2	10	1.5e-05	0.0024	20.1	0.9	1	23	274	297	274	297	0.97
3	10	0.037	6.1	9.4	1.1	3	23	309	330	307	330	0.97
4	10	0.28	45	6.6	2.1	1	23	371	394	371	394	0.89
5	10	0.00016	0.026	16.8	1.2	1	23	408	430	408	430	0.96
6	10	2.1e-05	0.0034	19.6	4.4	1	23	436	458	436	458	0.99
7	10	0.00027	0.045	16.1	0.8	2	23	468	489	467	489	0.97
8	10	5.7e-06	0.00093	21.4	2.3	1	23	497	519	497	519	0.98
9	10	1.3	2.1e+02	4.5	1.0	1	23	525	550	525	550	0.88
10	10	3.3e-05	0.0054	19.0	0.9	1	23	558	580	558	580	0.98

Sequence Information

Coding Sequence: ATGGATGAGTATTGTAGACTTTGTACAGCAAAAGATTGTAATTTAATTTTACTATATGAAATTAATAATATTAATAAAATTAAAACCTTATTAAAAATAAAAAAAGATGATGAACTCCCCCAAATGTGTTGTGATTCTTGTTTATTTCAAATTAATAATACTAATTCCTTTATTTTAAAATGTGAAAAATCTTATGAGTATTTCAAAAGCACATTATTAAATTGTTTAGATAAAGAACTAACGAAATCCAATTACTTTGAAGAAAATGATTTAAAAAGTGAACAGGAAGTTCGTAATATACCTTGTAACGATATTAAAGAATGTGTAACCGAATCTTTATTAATTAAAACTGAAGTAAAGGAAGAAAATTCAGAATTTCTAATTAACGAAACAGAAAGTAGTGGTTTTTTTAATGGAAATGATGAATTTGATTCAAATTGTGATTATAATATAAAACCAGCGGAAGTATTTCTTGAAAACGATATAGAACTAACCAAGGAAAATAAAATTAAAAAGAGCGGAAAAAAACGTAGAGAAAGAATTTGTAGCACTCTTAATGAAAAAGATAAATGGAAATGTCAATATTGTCCTCGAATTTTTACAACAGATAAAATTCTAAGAAGACATATGCAAAATATTCATACAAATCCAAATTTTAAATGTATTAAATGTGGATTTGAATGTACTAACAAATCAAACTGTGCTGGTCATGTCAAGAGAAAACATTTCAAAGAGTTGAATATGGAATTTGAAGAGCTTTTACAATTTGTATTGGAAAAAGAATCTGATACAAACGATGTAAATTTTTCAGATTTACCTTTTTCTTGTGATGGATGCACAAGATCGTTCGCTAAAGAATCTGATTTACAGAAACATAAAAATCGGGTTCATATAAGTGATCCAGATTCAATAAAATTATTTGGTTGTAAGAAGTGCGGCTCTAAGTATACGTACAGAAAAACAGCTGTAAAACATATACGAAATGTTCACTATGAGAGTAGGACTGAGCTTGTAAAAGCAGAAATTGATGAATATTTAGTGCAGTATGGTGAACCTAAAATAGAAGCAGAGATTGTAAAAACAAAAGAAAATAATGAAGAAGGATCTGTACATGAATGTCCTGTATGTCATTTAAAGTATTCTAGAGCTATAATACTTAAAAGTCACTTTGCTCGATTTCATTTAAGTGAAGATGAAAAGAAAAAACGAAAAAAAAAAATTTATTTATGTCAACAATGTGGGAAAAATTTTTCTGCTCGCTCAGCGTTCAAATATCATGTTCAAACACATTTTGGAGAAAAAGAGTTCAAATGTAGTGAGTGCTCTAAGGCTTATTATACAAAACATTTACTGCTTTCTCACATGAGAAAACATACAGGGGATATGAGTAATAGACAATTAGAATGTAAAATATGTCACAAAAGATGGCCAAGTAAAACAGCTTTAGAGCGACATATGAATGTTCATGGTCAAAAACAACCAAGAAATTATATGTGTTCAATTTGTGGAAACGCGTTTTATTCGAATTATCATTTAAAGAGTCATATGTTAAGACACACAAAGGAAAATAATTTCAAATGTACTGAACCTGGTTGTAACGCTTCATTTCGTGCTGATGGCAGTAGGAAAAAACATTACTATAATTTTCATGTTCCCGATGATCAAAAACCATTTTCTTGTGACATTTGTCAAAAAAAATTTTACCGCATAGCTTATTTAGCAGATCATTTAAGAAAACATGGCAAAGCAGCCGAATATATGCTTAATTTATATAGACAAAAACCTCAAAAAGAAAATTAG
Protein Sequence: MDEYCRLCTAKDCNLILLYEINNINKIKTLLKIKKDDELPQMCCDSCLFQINNTNSFILKCEKSYEYFKSTLLNCLDKELTKSNYFEENDLKSEQEVRNIPCNDIKECVTESLLIKTEVKEENSEFLINETESSGFFNGNDEFDSNCDYNIKPAEVFLENDIELTKENKIKKSGKKRRERICSTLNEKDKWKCQYCPRIFTTDKILRRHMQNIHTNPNFKCIKCGFECTNKSNCAGHVKRKHFKELNMEFEELLQFVLEKESDTNDVNFSDLPFSCDGCTRSFAKESDLQKHKNRVHISDPDSIKLFGCKKCGSKYTYRKTAVKHIRNVHYESRTELVKAEIDEYLVQYGEPKIEAEIVKTKENNEEGSVHECPVCHLKYSRAIILKSHFARFHLSEDEKKKRKKKIYLCQQCGKNFSARSAFKYHVQTHFGEKEFKCSECSKAYYTKHLLLSHMRKHTGDMSNRQLECKICHKRWPSKTALERHMNVHGQKQPRNYMCSICGNAFYSNYHLKSHMLRHTKENNFKCTEPGCNASFRADGSRKKHYYNFHVPDDQKPFSCDICQKKFYRIAYLADHLRKHGKAAEYMLNLYRQKPQKEN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -