Basic Information

Insect: Poecilobothrus nobilitatus
Gene Symbol: pita_1
Assembly: GCA_947095535.1
Location: OX352773.1:161491957-161494750[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0022 0.36 13.2 0.6 1 23 210 232 210 232 0.96

2 10 0.0005 0.082 15.3 1.5 1 23 238 260 238 260 0.97

3 10 1.5e-05 0.0024 20.1 0.4 1 23 266 288 266 288 0.99

4 10 0.0018 0.29 13.6 1.2 3 23 296 316 294 316 0.92

5 10 0.00023 0.037 16.3 0.5 1 23 322 344 322 344 0.92

6 10 2e-05 0.0033 19.6 0.4 1 23 350 372 350 372 0.96

7 10 0.12 19 7.8 7.2 1 23 378 400 378 400 0.98

8 10 2.1e-05 0.0034 19.6 0.8 1 23 408 430 408 430 0.96

9 10 0.0055 0.9 12.0 0.1 3 23 437 457 436 457 0.99

10 10 0.39 64 6.2 1.1 1 19 463 481 463 486 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0022	0.36	13.2	0.6	1	23	210	232	210	232	0.96
2	10	0.0005	0.082	15.3	1.5	1	23	238	260	238	260	0.97
3	10	1.5e-05	0.0024	20.1	0.4	1	23	266	288	266	288	0.99
4	10	0.0018	0.29	13.6	1.2	3	23	296	316	294	316	0.92
5	10	0.00023	0.037	16.3	0.5	1	23	322	344	322	344	0.92
6	10	2e-05	0.0033	19.6	0.4	1	23	350	372	350	372	0.96
7	10	0.12	19	7.8	7.2	1	23	378	400	378	400	0.98
8	10	2.1e-05	0.0034	19.6	0.8	1	23	408	430	408	430	0.96
9	10	0.0055	0.9	12.0	0.1	3	23	437	457	436	457	0.99
10	10	0.39	64	6.2	1.1	1	19	463	481	463	486	0.93

Sequence Information

Coding Sequence: ATGACGGATTTAGAAACTCAATTAAAAAATAAAAGAATTTGCAGATTTTGTCTTAATCAAGATGAAAAAGTTTTGTCGAATCTTTATTCACGAGAAAATCGTTTGAAAAATTCTGCTCCTCTTCCCCTTCAAGTAATGGCTTGTGTTTCGATTGAGGTTTTTACAAATGATGGAATGCCGAGTGAAATTTGTGAGGAATGTAGAATGTTAATGGATCATTGTTATCGTTTTAAACAAATGTGCAAGAAAGCTGATACTGCTTTAAGGCAATTCCCGTTAACCGGGAAATGGCCAGATAAAATAGAACATCCTCAAGTGCCTGAAGAATTATATGTTAAAAATATTAACAAAAACAATTCTGGCATCGTAAAAATTGAAGAAAATATTCCTGCTGAAACAAATCCTCAAGACAAGTCCTCAAATACACCTAAACAGAAAATATTAAATAAAAATCCAATTAAAATTTTGAATAAGGATGCTGCTAAAGCTAGAGAACCTGTATTAAAACAACCAGTTATTAAACATTCCAAAGATGGAACAATCGAATTGGTTACTGAAATAATCAATACTGATAATTATGAAGAAATCGATCCAATAAAATCTGCAGAACCTATAGAGACTCATGTTTTTCCATGTAATCATTGTGAAAGATCATTCCCTCTTCGTCAACTATTAGATATACATATGGTTAATCATAATCGCGAGAGAAATTTTCAGTGCAATAGTTGTGAAAAAAAGTTTTTTACCAAATATGATTTAGGAAAACATGCTCTTATTCATCAAAATGATAAACCATACAAATGTGTTGTTTGCGTAAAATCTTTTACAAGAGCTAACCTTTTACTTCGCCACGAAAGAATTCATACAGATATTCCAAAATTTTTATGTATTTATTGTGAAAAACCATTTATTTCAAAAGAAGAGTTACAAAAACATCATATACGTCATAATAAAAAAAGACCTTTTCCATGTAAATTGTGCAACAAATCTTTCGCATTCAAACAAGGTTTGGAGAGGCACGAAGTTCTTCATGTTAAAGAACAACCTTTTCCTTGTCAATATTGTAATTTAAGTTTTCCAACTCCAAGTAAATTATCACGTCATTTGACGGCTCATGCGGGAGCCAGACCATATCCGTGCAAATTTTGCTCTAAGTCATTTTTATTAAGTCATCATTTAAGCCGTCATTTCAGATCTCATAAAGAAGGGTCTGGAGCATTATTTAAATGTTATGATTGTGATCAAACTTTTACATCAAGAGATAATTTAATTTATCATTCAGCAGTACATGCAACACAAACTTTATTATGTCCAATTTGTAAGGAGCAATTCGAGGATATTGATTCTGTAACTGATCATATTAAAATGCACGCATTGGGAGAACAATATGCTTGCGAATTTTGTGATTTAATTTTCATGACCCAAGAAAAATTAGATAATCATTGTACTCAAGTTCATGTAGAAGAGATGGATGTATATAAAGAACATGATAAAACTAATCCTAAAAAACATGAAATAACAACATCCCAGGAGGTTAATGAAGCCGAAATTATACAGGAATTCATCATAGAAGAGTTTGATGATACCCTTATTAAAGAGGAAATCGTTATAGAAGAAAATAATATTGATATGCAGGAGAATTCACCTTCTCCAACACCGACCAAAAAGCGTAGGGGAAGAAAGAAAAAAAATGTAGAAAACTTTGAACCTATTACTGAAGATACAAACGACCGTAGTTATAGTTCTCCTAATGATATAGATTTTGATGATTTTACTGCAGAAGAAACAGCTCTTTTCGAAGAGTTACTTGAAGCACCACCAAGAAAAATATTAAAAAAAGATAGATATGACACCGAACAATTATTAAAACAAAAATTTAAAAAATCACCAAGCGAAACTTCAACACCCAAAATGAAACAATCTCTTCTATCAACAATTGTTCAAACTATACCAAAAGGAATAACAATTTCTAAAAAAAAAAATGCTAAGGTTATTGATGAAACAATTATACGTGAACCAGATACTATAAAAAAAGAAAAAAATCAATCTGAGTCAAATAGTCCAAAAATGAAAAAAATATTAAATAAATCTGATGAAGGAAATAAAAAAATTACAGAAAAATCTGAAACGATTAATCACGGTAATAAAAAAATACAAGTAAAAAAAATTCAAGTAACAAAAGCTCAAGTAGAATTAATGGCTCAACAAGGAAAAATCAACTTTAATAAAGATGGATCAATGAGCATAAAACAGGGTTCAAATAAAAACAAAAAGAAATAA
Protein Sequence: MTDLETQLKNKRICRFCLNQDEKVLSNLYSRENRLKNSAPLPLQVMACVSIEVFTNDGMPSEICEECRMLMDHCYRFKQMCKKADTALRQFPLTGKWPDKIEHPQVPEELYVKNINKNNSGIVKIEENIPAETNPQDKSSNTPKQKILNKNPIKILNKDAAKAREPVLKQPVIKHSKDGTIELVTEIINTDNYEEIDPIKSAEPIETHVFPCNHCERSFPLRQLLDIHMVNHNRERNFQCNSCEKKFFTKYDLGKHALIHQNDKPYKCVVCVKSFTRANLLLRHERIHTDIPKFLCIYCEKPFISKEELQKHHIRHNKKRPFPCKLCNKSFAFKQGLERHEVLHVKEQPFPCQYCNLSFPTPSKLSRHLTAHAGARPYPCKFCSKSFLLSHHLSRHFRSHKEGSGALFKCYDCDQTFTSRDNLIYHSAVHATQTLLCPICKEQFEDIDSVTDHIKMHALGEQYACEFCDLIFMTQEKLDNHCTQVHVEEMDVYKEHDKTNPKKHEITTSQEVNEAEIIQEFIIEEFDDTLIKEEIVIEENNIDMQENSPSPTPTKKRRGRKKKNVENFEPITEDTNDRSYSSPNDIDFDDFTAEETALFEELLEAPPRKILKKDRYDTEQLLKQKFKKSPSETSTPKMKQSLLSTIVQTIPKGITISKKKNAKVIDETIIREPDTIKKEKNQSESNSPKMKKILNKSDEGNKKITEKSETINHGNKKIQVKKIQVTKAQVELMAQQGKINFNKDGSMSIKQGSNKNKKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -